Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq18099 188 7e-43 seq21777 82.4 7e-11 >seq18099 Length=159039 Score = 188 bits (208), Expect = 7e-43 Identities = 585/887 (66%), Gaps = 24/887 (3%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 || ||||| |||| ||||| || | || |||||||||||||| |||| || ||| | Sbjct 20943 TTCTGATAATCACCAACTC-TCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| | ||| |||||| ||| | ||||| || | || | | | ||| Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 || ||||| || || || || ||||||||| ||| || || |||||| || | | Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCA- 20766 Query 11518 ATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | ||| |||| || | | |||||| | || || | |||||||||| | | Sbjct 20765 ACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAA 20706 Query 11577 TCGACGTTATAACTTCCTTAG-ATGGT--GGATGTAATAAATGTTTAAACATTAAACACG 11633 ||||| | | ||||| | | | | | | |||| | | || |||| | ||||| | Sbjct 20705 TCGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAG 20649 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 | |||||||| || | |||||||||||| |||| || ||||| || ||||| || | Sbjct 20648 CGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAG 20589 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 |||| | ||| ||||| || | ||| || || | | || |||||||| |||||||| | Sbjct 20588 GCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATAC 20529 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT--ATCCA 11811 | || ||| || || ||||| | | ||| | || || | | || ||||| Sbjct 20528 CTTCAACACAAGCGAACGCTACGATACGTTCAGCGAAT--GTTTGAGATCCATCGATCCA 20471 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 | | ||||| | ||||||||| | || || || ||||| || || ||||| Sbjct 20470 AGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAA 20411 Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 ||| | ||||| | |||||| | | ||||| || | | | | |||||| ||||| Sbjct 20410 ATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGA 20351 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTAC 11991 ||| ||||| || ||||| ||||| ||||| ||||| || || || || ||||| Sbjct 20350 ATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTAC 20291 Query 11992 ATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA 12050 ||| |||| |||| | || | || || ||| || || ||| | || || | Sbjct 20290 ATCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGA 20232 Query 12051 ATGCTAGTATATGTTTTATAAAGT---ATTTTTCGTC-TTTAGTTAATTTATCCCAATCA 12106 | || |||| ||||| || |||| || | |||| || || |||| ||||| ||| Sbjct 20231 AAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAG---ATTT-TCCCAGTCA 20176 Query 12107 TCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTA 12166 |||| ||| | ||| |||||||| ||||||| || ||| | | || || Sbjct 20175 CGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTG 20116 Query 12167 TACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 ||||||| |||||| | | || | ||| || || ||| ||| || Sbjct 20115 TACATTTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 20069 >seq21777 Length=19835 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | | Sbjct 4371 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 4430 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| | | || |||| ||| || || |||||| | ||| || || | || Sbjct 4431 AGACATTAAGTGGTAAGTTTTAATTGCAGAGTCAATATCATCCTTGTGTATCCCAACAGC 4490 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||| ||||| ||||| || || || Sbjct 4491 AACCCTCATCAGCATGTGTTGAGGCCTCTC 4520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468356277486000