Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 188 7e-43
seq21777 82.4 7e-11
>seq18099
Length=159039
Score = 188 bits (208), Expect = 7e-43
Identities = 585/887 (66%), Gaps = 24/887 (3%)
Strand=Plus/Minus
Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397
|| ||||| |||| ||||| || | || |||||||||||||| |||| || ||| |
Sbjct 20943 TTCTGATAATCACCAACTC-TCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885
Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457
|||||| | ||| |||||| ||| | ||||| || | || | | | |||
Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825
Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517
|| ||||| || || || || ||||||||| ||| || || |||||| || | |
Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCA- 20766
Query 11518 ATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576
| ||| |||| || | | |||||| | || || | |||||||||| | |
Sbjct 20765 ACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAA 20706
Query 11577 TCGACGTTATAACTTCCTTAG-ATGGT--GGATGTAATAAATGTTTAAACATTAAACACG 11633
||||| | | ||||| | | | | | | |||| | | || |||| | ||||| |
Sbjct 20705 TCGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAG 20649
Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693
| |||||||| || | |||||||||||| |||| || ||||| || ||||| || |
Sbjct 20648 CGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAG 20589
Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753
|||| | ||| ||||| || | ||| || || | | || |||||||| |||||||| |
Sbjct 20588 GCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATAC 20529
Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT--ATCCA 11811
| || ||| || || ||||| | | ||| | || || | | || |||||
Sbjct 20528 CTTCAACACAAGCGAACGCTACGATACGTTCAGCGAAT--GTTTGAGATCCATCGATCCA 20471
Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871
| | ||||| | ||||||||| | || || || ||||| || || |||||
Sbjct 20470 AGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAA 20411
Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931
||| | ||||| | |||||| | | ||||| || | | | | |||||| |||||
Sbjct 20410 ATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGA 20351
Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTAC 11991
||| ||||| || ||||| ||||| ||||| ||||| || || || || |||||
Sbjct 20350 ATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTAC 20291
Query 11992 ATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA 12050
||| |||| |||| | || | || || ||| || || ||| | || || |
Sbjct 20290 ATCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGA 20232
Query 12051 ATGCTAGTATATGTTTTATAAAGT---ATTTTTCGTC-TTTAGTTAATTTATCCCAATCA 12106
| || |||| ||||| || |||| || | |||| || || |||| ||||| |||
Sbjct 20231 AAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAG---ATTT-TCCCAGTCA 20176
Query 12107 TCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTA 12166
|||| ||| | ||| |||||||| ||||||| || ||| | | || ||
Sbjct 20175 CGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTG 20116
Query 12167 TACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213
||||||| |||||| | | || | ||| || || ||| ||| ||
Sbjct 20115 TACATTTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 20069
>seq21777
Length=19835
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/150 (72%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459
||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | |
Sbjct 4371 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 4430
Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519
|||| | | || |||| ||| || || |||||| | ||| || || | ||
Sbjct 4431 AGACATTAAGTGGTAAGTTTTAATTGCAGAGTCAATATCATCCTTGTGTATCCCAACAGC 4490
Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|||||||| ||||| ||||| || || ||
Sbjct 4491 AACCCTCATCAGCATGTGTTGAGGCCTCTC 4520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468356277486000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |