Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 206 3e-48
seq28467 114 2e-20
>seq18099
Length=159039
Score = 206 bits (228), Expect = 3e-48
Identities = 578/879 (66%), Gaps = 6/879 (1%)
Strand=Plus/Minus
Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925
||| || || ||||| || | || || ||||||||||| || |||| ||| |||
Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885
Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985
||||| |||| || ||||| | ||| ||| | ||| | | || | || |
Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825
Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045
||| ||||| || ||||| || ||||| |||||| ||||| |||||| || | |
Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765
Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105
| ||||| || || | ||| ||| ||||| ||||| || | |||
Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705
Query 36106 AGATATTACTGTTTCTTCACTCGG-TGGATACAATAAATGTTTAAACATCAAACATGCGA 36164
|| | ||| |||| ||||| | | ||| ||| | || | |||||||| ||||
Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACG-TAACAGAGTATAAATCAAACAAGCGA 20646
Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224
|||| ||||| ||||| |||||||| ||||| ||||| || || || | || ||||
Sbjct 20645 AATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGCA 20586
Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284
| || ||||| || |||||||| || || || || || ||||| ||||| || ||||
Sbjct 20585 TGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTT 20526
Query 36285 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTT 36344
| || || || || | | | || | | | ||| ||||| |
Sbjct 20525 CAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGTCA 20466
Query 36345 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 36404
|||||| | || ||||| | |||||||| || || || || ||| || | || |
Sbjct 20465 TAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAATGAT 20406
Query 36405 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 36464
| |||| || ||||||| | ||||| || | | |||| |||||| || ||||| |
Sbjct 20405 CTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAATGGA 20346
Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524
| || ||||| || ||||| ||||||||||| | || |||| | ||||| ||||
Sbjct 20345 TATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATCTG 20286
Query 36525 TACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 36583
||| |||||| || | ||||| || ||||||||| || || || || ||
Sbjct 20285 -ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAGCG 20227
Query 36584 AATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTCCAATCATTGATATC 36642
| ||| ||||| || || | ||| | | ||| || || | ||| ||| | | ||
Sbjct 20226 AGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTTGTC 20168
Query 36643 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 36702
|| || | ||| |||||||| | ||||| || ||||| || || || || ||||| |
Sbjct 20167 TTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATTTC 20108
Query 36703 CCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741
|||||| | | || ||||| ||||| ||| |||||
Sbjct 20107 CCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 20069
>seq28467
Length=106825
Score = 114 bits (126), Expect = 2e-20
Identities = 159/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274
|||||| ||||| | || | ||| || | |||| | || | || ||| |||| ||||||
Sbjct 81283 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 81342
Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334
||| ||| ||||| || || ||||| |||||| |||| || |||||| ||| ||
Sbjct 81343 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGA 81402
Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394
| ||| || || || || |||| || ||| || ||| ||||||||||| ||
Sbjct 81403 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 81462
Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437
||||| |||||||||||| |||| | ||||| ||||||
Sbjct 81463 TCCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657936063471000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |