Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5576 127 2e-24 seq7697 114 1e-20 seq16226 111 2e-19 seq24711 109 5e-19 seq14351 84.2 2e-11 seq8442 84.2 2e-11 >seq5576 Length=16168 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||| ||| ||||| | || ||||| ||||| ||||| ||||| | Sbjct 1255 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 1314 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||||||||| ||| |||| || | ||| || || ||||| Sbjct 1315 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 1374 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| || ||||||| | || ||| Sbjct 1375 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCGGAGCTTTCGACC 1434 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 |||| || | |||||||| || | ||||| ||||| |||||||| || Sbjct 1435 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCATCGC 1484 >seq7697 Length=17472 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||| | || |||||||| || ||||| ||||| Sbjct 10649 CCACCACGAAGACGCAAGACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCCGCA 10708 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || ||| ||||| || || |||||||| |||| || | |||||||| ||||| Sbjct 10709 AGAGTTCTCCCATCTTCAAGTTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGAGGA 10768 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || ||| | | || | ||||||| | ||||||| Sbjct 10769 ATACCTTCCTTGTCTTGGATCTTAGCTTTCACATTGTCAATAGTGTCGGAGCTCTCCACC 10828 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||||||||||| || || || || || |||||| Sbjct 10829 TCAAGAGTAATGGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATA 10876 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || || || | |||||| || | ||| | ||||||||||| || ||||| || || ||| Sbjct 10877 CCACCACGAAGACGCAACACAAGGTGGAGTGTAGACTCTTTCTGGATGTTGTAGTCTGCT 10936 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| || || |||||||| |||| || | ||||||||| ||||| Sbjct 10937 -AGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGG 10995 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| ||| || | | || | || || | | ||| || Sbjct 10996 AATTCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTATCGATCGTATCAGAGCTCTCAAC 11055 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | ||||| |||||||| || || || || ||||||||| Sbjct 11056 CTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATA 11104 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||||||||| |||||| | ||||||||| ||||| || ||||| ||| Sbjct 11177 TCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGAATACCTTCCTTG 11236 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | | ||| ||||| | || | Sbjct 11237 TCCTGGATCTTAGCCTTGACATTATCGATAGTGTCAGAGCTCTCGACCTCGAGAGTTATG 11296 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||||| |||||||||||||| Sbjct 11297 GTCTTTCCAGTAAGTGTTTTCACGAATATTTGCAT 11331 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| || || || || || ||||| ||||| Sbjct 9965 CCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCGCA 10024 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || ||||| || |||| || | |||||||| ||||| Sbjct 10025 AGAGTCCTTCCATCTTCAAGTTGCTTACCTGCGAAGATAAGTCTCTGCTGATCCGGAGGA 10084 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 10085 ATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTCTATTGTGTCTGAGCTCTCCACC 10144 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | || || || || | || || |||||||| |||||| Sbjct 10145 TCAAGGGTAATGGTTTTACCAGTGAGGGTCTTCACGAATATCTGCATA 10192 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | |||||||||||||| ||||| || || Sbjct 10421 CCACCTCTGAGACGAAGCACCAAGTGGAGAGTAGACTCTTTTTGGATGTTGTAGTCTGCG 10480 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || ||||| || || ||| |||| || | |||||||| || || Sbjct 10481 AGTGTGCGACCATCCTCTAGCTGCTTCCCGGCAAAGATAAGTCTCTGCTGATCCGGTGGG 10540 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| || | | || | |||||| | | ||||||| Sbjct 10541 ATTCCCTCTTTGTCTTGGATTTTGGCCTTGACATTATCGATTGTGTCTGAGCTCTCCACC 10600 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || ||||| || | || || || || || |||||| Sbjct 10601 TCCAAAGTGATTGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATA 10648 >seq16226 Length=39664 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| || ||||| || |||||||| || ||| Sbjct 11138 CCACCACGAAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 11197 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| || |||||| | || ||||| ||||| || ||||| Sbjct 11198 AAGGTACGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 11257 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 11258 ATACCTTCTTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCAACC 11317 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| ||| | ||||| || ||||| || || ||||| ||||||||| || Sbjct 11318 TCAAGGGTAATGGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCATACCT 11368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||| | || |||||||| || || || || || | Sbjct 11822 CCACCACGAAGACGCAACACCAAGTGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGCC 11881 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| || || || || || |||||| | ||||| || ||||| Sbjct 11882 AGAGTTCTACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 11941 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| || || | | || | ||||||| | || || Sbjct 11942 ATACCCTCTTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACT 12001 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | |||||||||||||| || || || || || |||||| || Sbjct 12002 TCCAAGGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAAATCTGCATACCT 12052 >seq24711 Length=27656 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| |||||| || || |||| ||||||||||| || ||||| ||||| | Sbjct 4878 CCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 4819 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| ||||| ||||||||| |||||| | ||||| || ||||| Sbjct 4818 AAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGA 4759 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| | || | || | | || | ||||||| | || || Sbjct 4758 ATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAAC 4700 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| ||||| || || || || || |||||| Sbjct 4699 TTCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCATA 4651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||| | || ||||| || || || || || || | Sbjct 5334 CCACCACGGAGACGCAACACCAAGTGTAATGTGGACTCCTTCTGGATATTGTAGTCAGCC 5275 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| || || ||| |||| ||||| ||||| || || || Sbjct 5274 AAAGTCCGACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGG 5215 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 5214 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATTGTGTCTGAGCTCTCCACC 5155 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||| |||||||| || || ||||| || |||||| Sbjct 5154 TCAAGAGTGATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCATA 5107 >seq14351 Length=15190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || ||||| || || ||||| ||||| Sbjct 4162 CCACCTCTGAGACGAAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGCA 4103 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||||||||| ||| |||||| | ||||| || ||||| Sbjct 4102 AGAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 4043 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | || | | || | |||||||| | || || Sbjct 4042 ATTCCTTCTTTATC-TTGAATCTTAGCCTTGACACTGTCAATTGTGTCGGAGCTTTCGAC 3984 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | |||||||| || | || ||||| || |||||||| Sbjct 3983 CTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 3936 >seq8442 Length=60656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | || | ||| | || ||||| || || ||||| ||||| | | Sbjct 44033 CCACCGCGTAAACGAAGGACAAGGTGTAGAGTTGACTCCTTCTGGATGTTGTAATC-CGC 44091 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | ||| ||| |||||||||||||| ||| |||| || | |||| || |||| Sbjct 44092 AA-GAGTACGACCGTCCTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTCGTCCGGAG 44150 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || |||||||| || ||| || || | | || | |||||||| | || | Sbjct 44151 AAATTCCTTCTTTATCTTGGATCTTGGTCTTGATATTGTCAATTGTGTCGGAGCTTTCGA 44210 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 | |||| ||| | |||||||| || | || || || || |||||||| || Sbjct 44211 CTTCAAGGGTTATGGTCTTGCCTGTAAGAGTCTTAACAAAGATTTGCATCGC 44262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495885571980000