Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18099 228 1e-54 seq28467 100 4e-16 >seq18099 Length=159039 Score = 228 bits (252), Expect = 1e-54 Identities = 603/910 (66%), Gaps = 12/910 (1%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || ||||| || | || || ||||||||||| || |||| || ||| Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||||||||| | ||| ||| | ||| | | || | || | Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||| |||||||| ||||| || ||||| |||||| ||||| |||||| || | | Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | ||||| || || | ||| ||| ||||| |||||||| | ||| Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705 Query 49908 AGATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGC 49964 || | || |||| ||||| | | | | || | | || |||| ||||||| || Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAGC 20648 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 |||||| ||||| ||||| |||||||| |||| ||||| || || || | || || Sbjct 20647 GAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGG 20588 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCC 50084 ||| || ||||| || |||||||| || || || || || ||||| ||||| || || Sbjct 20587 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 20528 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCCACT 50143 ||| || || || || || | | || | | | | | | ||| ||||| Sbjct 20527 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-CATCGATCCAAG 20469 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | |||||| | || ||||| | |||||||| |||||||| || ||| || | || Sbjct 20468 TCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAAT 20409 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | | |||| || ||||||| | || || |||| | |||| |||||| || |||| Sbjct 20408 GATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAAT 20349 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | || || ||||| || || || ||||||||||| | || |||| | || || | Sbjct 20348 GGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACAT 20289 Query 50324 CTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| ||| |||||| ||| | ||||| || ||||||||| || || || || Sbjct 20288 CTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAA 20230 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCAATCATTGAT 50441 || | ||| ||||| || || || ||| | | ||| || || | ||| ||| | | Sbjct 20229 GCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTT 20171 Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 |||| || | ||| |||||||| | ||||| || ||||| || || || || ||||| Sbjct 20170 GTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACAT 20111 Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 50561 | |||||| | | || || || || || ||| ||||| | ||| |||| | ||| Sbjct 20110 TTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGGTGTTGGGGTAAG 20051 Query 50562 GATCGGTTCC 50571 || || ||| Sbjct 20050 GAGAGGCTCC 20041 >seq28467 Length=106825 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | |||| | || | || ||| |||| |||||| Sbjct 81283 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 81342 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||| ||||| || || ||||| |||||| | || || |||||| ||| || Sbjct 81343 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGA 81402 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || |||| || ||| || ||| ||||||||||| || Sbjct 81403 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 81462 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| || |||||||| |||| | ||||| |||||| Sbjct 81463 TCCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718010447691000