Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 228 1e-54
seq28467 100 4e-16
>seq18099
Length=159039
Score = 228 bits (252), Expect = 1e-54
Identities = 603/910 (66%), Gaps = 12/910 (1%)
Strand=Plus/Minus
Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727
||| || || ||||| || | || || ||||||||||| || |||| || |||
Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885
Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787
||||| ||||||||||||| | ||| ||| | ||| | | || | || |
Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825
Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847
||| |||||||| ||||| || ||||| |||||| ||||| |||||| || | |
Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765
Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907
| ||||| || || | ||| ||| ||||| |||||||| | |||
Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705
Query 49908 AGATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGC 49964
|| | || |||| ||||| | | | | || | | || |||| ||||||| ||
Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAGC 20648
Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024
|||||| ||||| ||||| |||||||| |||| ||||| || || || | || ||
Sbjct 20647 GAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGG 20588
Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCC 50084
||| || ||||| || |||||||| || || || || || ||||| ||||| || ||
Sbjct 20587 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 20528
Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCCACT 50143
||| || || || || || | | || | | | | | | ||| |||||
Sbjct 20527 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-CATCGATCCAAG 20469
Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203
| |||||| | || ||||| | |||||||| |||||||| || ||| || | ||
Sbjct 20468 TCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAAT 20409
Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263
| | |||| || ||||||| | || || |||| | |||| |||||| || ||||
Sbjct 20408 GATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAAT 20349
Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323
| || || ||||| || || || ||||||||||| | || |||| | || || |
Sbjct 20348 GGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACAT 20289
Query 50324 CTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382
||| ||| |||||| ||| | ||||| || ||||||||| || || || ||
Sbjct 20288 CTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAA 20230
Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCAATCATTGAT 50441
|| | ||| ||||| || || || ||| | | ||| || || | ||| ||| | |
Sbjct 20229 GCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTT 20171
Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501
|||| || | ||| |||||||| | ||||| || ||||| || || || || |||||
Sbjct 20170 GTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACAT 20111
Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 50561
| |||||| | | || || || || || ||| ||||| | ||| |||| | |||
Sbjct 20110 TTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGGTGTTGGGGTAAG 20051
Query 50562 GATCGGTTCC 50571
|| || |||
Sbjct 20050 GAGAGGCTCC 20041
>seq28467
Length=106825
Score = 100 bits (110), Expect = 4e-16
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| ||||| | || | ||| || | |||| | || | || ||| |||| ||||||
Sbjct 81283 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 81342
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||| ||||| || || ||||| |||||| | || || |||||| ||| ||
Sbjct 81343 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGA 81402
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| || || || || |||| || ||| || ||| ||||||||||| ||
Sbjct 81403 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 81462
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
||||| || |||||||| |||| | ||||| ||||||
Sbjct 81463 TCCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718010447691000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |