Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq18099 145 7e-30 >seq18099 Length=159039 Score = 145 bits (160), Expect = 7e-30 Identities = 553/855 (65%), Gaps = 21/855 (2%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| |||| |||||| || ||||| || ||||| || |||| | ||| Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 ||||| ||||||| ||||| | | ||| | |||||||| || | || || | || Sbjct 20884 CTCCATCCAATCAAACGGATT-ACTCACACCATACACTTTACCATACCCAAGCGCACCTA 20826 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 || ||||| |||| |||||||||||| ||| ||| || |||| |||||| || | | Sbjct 20825 ACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCA 20766 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| | || ||| ||| | || || || || || | || Sbjct 20765 ACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAA 20706 Query 13819 T-AATTGTAATAAT--CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13875 | | | | | | |||| | ||| || | | | | || |||| ||||| | Sbjct 20705 TCGACTTCACTCTTTCCTCACT--AAGCTTCGTACGTAACA-GAGTATAAATCAAACAAG 20649 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 | |||||||| ||||| || || ||||| || | ||||| || || ||||| || | Sbjct 20648 CGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAG 20589 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 |||| | ||| ||||| || | ||| || || | | || || || || |||||||| | Sbjct 20588 GCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATAC 20529 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--AT 14053 | ||||| ||| ||||||| | ||||| | || | ||| | || || || Sbjct 20528 CTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATG-----TTTGAGATCCATCGAT 20474 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| | ||||||||| || ||| || ||| | || || ||||| || ||| || Sbjct 20473 CCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAA 20414 Query 14114 TAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14173 ||||| || | ||||| || | |||||||| || | ||| | |||||| || Sbjct 20413 TAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTC 20354 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCCGACCATT 14232 || || || || || ||||| || || || || || || ||| | ||||| || || Sbjct 20353 TGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTTCGGAGACTT 20295 Query 14233 GTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292 |||| || || |||| | || | ||||| || || || ||| || || | Sbjct 20294 GTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGA 20235 Query 14293 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT--C 14350 | || || | || || ||| || |||| | ||| | | |||||| |||| ||| | | Sbjct 20234 AGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTCAC 20175 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 || | || | || ||||| ||||| || | ||||| || || | ||||| || Sbjct 20174 GGTT--GTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTT 20117 Query 14411 ATACATTACCCATAT 14425 |||||| |||| || Sbjct 20116 GTACATTTCCCAGAT 20102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479555447835000