Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq18099 176 4e-39 >seq18099 Length=159039 Score = 176 bits (194), Expect = 4e-39 Identities = 555/852 (65%), Gaps = 15/852 (2%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| |||| |||||| || |||||||| ||||| || |||| | ||| Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| || ||||| | ||| | |||||||| || | || || | || Sbjct 20884 CTCCATCCAATCAAACGGATTACTC-ACACCATACACTTTACCATACCCAAGCGCACCTA 20826 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | || ||||| |||| |||||||||||| ||| ||| || |||| |||||| || | | Sbjct 20825 ACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCA 20766 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||||| | | || ||| ||| | || || || || || | || Sbjct 20765 ACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAA 20706 Query 13607 TAATCTTAATAATGTCATTAG-AAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 | ||| | | || | | ||| || | | | | || |||| ||||| || Sbjct 20705 TCGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACA-GAGTATAAATCAAACAAGCG 20647 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 |||||||| ||||| || || ||||| || | ||||| || || ||||| || ||| Sbjct 20646 AAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGC 20587 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || | ||| ||||| || | ||| || || | | ||| || || || |||||||| || Sbjct 20586 ATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCT 20527 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCC 13843 ||||| ||| ||||||| | ||||| | || | ||| | | || |||| Sbjct 20526 TCAACACAAGCGAACGCTACGATACGTTCAGCGAATG-----TTTGAGATCCATCGATCC 20472 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 | | ||||||||| || ||| || ||| | || || |||||||||||| ||||| Sbjct 20471 AAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATA 20412 Query 13904 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963 |||| || | ||||| || | |||||||| || | ||| | |||||| || | Sbjct 20411 AATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTG 20352 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023 | || || || || ||||| || || || || || || | ||||| || ||||| Sbjct 20351 AATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTA 20292 Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 | || || |||| | || | |||||| || || || ||| || || || | Sbjct 20291 CATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGA 20232 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT--CGGC 14141 | || | || || ||| || |||| | ||| | | |||||| |||| ||| | ||| Sbjct 20231 AAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTCACGGT 20172 Query 14142 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 | || | || ||||| ||||| || | ||||| || || | ||||| || || Sbjct 20171 T--GTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTA 20114 Query 14202 CATTACCCATAT 14213 |||| |||| || Sbjct 20113 CATTTCCCAGAT 20102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478416657591000