Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq24711 111 1e-19 seq16226 107 1e-18 seq5576 96.9 3e-15 >seq24711 Length=27656 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||||| || | || ||||| || | ||||||||| | | Sbjct 4422 CCACCACGAAGACGCAACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCC 4363 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| |||||||| || || || || ||||||| ||| ||||| | || Sbjct 4362 AAGGTACGTCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 4303 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| || | |||| || || | | || || | || || Sbjct 4302 ATACCTTCCTTATC-CTGAATCTTCGCTTTAACGTTGTCGATCGTATCAGAACTTTCCAC 4244 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| |||||||||||||| || ||||| Sbjct 4243 CTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 4196 >seq16226 Length=39664 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | ||||| || | ||| |||||| || | ||||||||| | | Sbjct 12278 CCACCACGAAGCCTGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCC 12337 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || |||||||| || || || || ||||||| ||| ||||| | || Sbjct 12338 AAGGTACGTCCATCTTCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 12397 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || ||| ||||| | || || Sbjct 12398 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATCGTGTCAGAACTTTCCACC 12457 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| |||||||||||||| || ||||| Sbjct 12458 TCGAGGGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 12504 >seq5576 Length=16168 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| ||||||||| | |||||||| | ||| ||||| |||| || Sbjct 1273 ACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCG 1332 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| |||||||| || | | ||||| || | || | |||||||| || | Sbjct 1333 AGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGGATTCCTTCTTTGTCTTGG 1392 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTT 43079 ||| | ||||| | | || |||||| ||| | |||| || | ||||| || || Sbjct 1393 ATCTTGGCCTTGACGTTTTCTACGGTGTCGG-AGCTTTCGACCTCAAGTGTTATGGTCTT 1451 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||||||||| || |||||||| Sbjct 1452 GCCCGTAAGAGTTTTCACGAAGATTTGCAT 1481 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||| | | ||||| | || || | ||||| |||||||| Sbjct 1063 TCCTTTTGGATATTGTAATCCGCAAGAGTACGGCCATCCTCTAGCTGTTTACCGGCAAAG 1122 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | | |||||| || | || | |||||||| || ||| | ||||| || Sbjct 1123 ATAAGCCTCTGTTGGTCCGGAGGGATTCCTTCTTTATCTTGAATCTTGGCCTTGACGTTG 1182 Query 43039 CCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| ||| | |||| || | ||||| ||||| || ||||| |||||||| Sbjct 1183 TCAATGGTGTCTG-AGCTTTCGACCTCGAGTGTTATGGTTTTGCCAGTTAGGGTTTTCAC 1241 Query 43098 AAAAATTTGCAT 43109 ||| |||||||| Sbjct 1242 AAAGATTTGCAT 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381235855468950