Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 244 1e-59
seq28467 109 7e-19
>seq18099
Length=159039
Score = 244 bits (270), Expect = 1e-59
Identities = 603/907 (66%), Gaps = 6/907 (1%)
Strand=Plus/Minus
Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832
||| || || ||||| || | || || |||||||||||||| |||| || |||
Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885
Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892
||||| ||||||||||||| | ||| ||| | ||| | | || | || |
Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825
Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952
||| ||||| || | || || ||||| |||||| ||||| |||||| || | |
Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765
Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012
| ||||| || || | ||| ||| ||||| ||||| || | |||
Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705
Query 42013 AGATCTTACTGTTTCTTCACTCGG-TGGATACAATAAATGTTTAAACATCAAACATGCGA 42071
|| | ||| |||| ||||| | | ||| ||| | || | |||||||| ||||
Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACG-TAACAGAGTATAAATCAAACAAGCGA 20646
Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131
|||| ||||| ||||| || ||||| ||||| ||||| || || || | || ||||
Sbjct 20645 AATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGCA 20586
Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191
| || ||||| || |||||||| || || || || || ||||| ||||| || ||||
Sbjct 20585 TGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTT 20526
Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTT 42251
| || || || || | | | || | | | ||| ||||| |
Sbjct 20525 CAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGTCA 20466
Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311
|||||| | || ||||| | |||||||| |||||||| || ||| || | || |
Sbjct 20465 TAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAATGAT 20406
Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371
| |||| || ||||||| | ||||| |||| | |||| |||||| |||||||| |
Sbjct 20405 CTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAATGGA 20346
Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431
| || ||||| || || || ||||||||||| | || |||| || ||||| ||||
Sbjct 20345 TATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATCTG 20286
Query 42432 TACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490
||| |||||| ||| | |||||| || ||||||||| || || || || ||
Sbjct 20285 -ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAGCG 20227
Query 42491 AATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCATTGATATC 42549
| ||| ||||| || || | ||| |||| ||| | || | ||| ||| | | ||
Sbjct 20226 AGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTTGTC 20168
Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609
|| || | ||| |||||||| | ||||| || |||||||| || || || ||||| |
Sbjct 20167 TTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATTTC 20108
Query 42610 CCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGAT 42669
|||||| | | || ||||| || || ||| ||||| | ||| |||| | |||||
Sbjct 20107 CCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGGTGTTGGGGTAAGGAG 20048
Query 42670 CGGTTCC 42676
|| |||
Sbjct 20047 AGGCTCC 20041
>seq28467
Length=106825
Score = 109 bits (120), Expect = 7e-19
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|||||| ||||| | || | ||| || | |||| | || | || ||| |||| ||||||
Sbjct 81283 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 81342
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
||| ||| | ||||| || || ||||| |||||| | || || ||||| ||| ||
Sbjct 81343 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGA 81402
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| ||| || || || || |||| || ||| || ||| ||||||||||| ||
Sbjct 81403 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 81462
Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399
||||| |||||||||||| |||| | ||||| ||||||
Sbjct 81463 TCCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670897799619000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |