Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18099 244 1e-59 seq28467 109 7e-19 >seq18099 Length=159039 Score = 244 bits (270), Expect = 1e-59 Identities = 603/907 (66%), Gaps = 6/907 (1%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || ||||| || | || || |||||||||||||| |||| || ||| Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||||||||| | ||| ||| | ||| | | || | || | Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 ||| ||||| || | || || ||||| |||||| ||||| |||||| || | | Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | ||||| || || | ||| ||| ||||| ||||| || | ||| Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705 Query 42013 AGATCTTACTGTTTCTTCACTCGG-TGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 || | ||| |||| ||||| | | ||| ||| | || | |||||||| |||| Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACG-TAACAGAGTATAAATCAAACAAGCGA 20646 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 |||| ||||| ||||| || ||||| ||||| ||||| || || || | || |||| Sbjct 20645 AATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGCA 20586 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 | || ||||| || |||||||| || || || || || ||||| ||||| || |||| Sbjct 20585 TGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTT 20526 Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTT 42251 | || || || || | | | || | | | ||| ||||| | Sbjct 20525 CAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGTCA 20466 Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311 |||||| | || ||||| | |||||||| |||||||| || ||| || | || | Sbjct 20465 TAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAATGAT 20406 Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371 | |||| || ||||||| | ||||| |||| | |||| |||||| |||||||| | Sbjct 20405 CTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAATGGA 20346 Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431 | || ||||| || || || ||||||||||| | || |||| || ||||| |||| Sbjct 20345 TATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATCTG 20286 Query 42432 TACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490 ||| |||||| ||| | |||||| || ||||||||| || || || || || Sbjct 20285 -ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAGCG 20227 Query 42491 AATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCATTGATATC 42549 | ||| ||||| || || | ||| |||| ||| | || | ||| ||| | | || Sbjct 20226 AGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTTGTC 20168 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609 || || | ||| |||||||| | ||||| || |||||||| || || || ||||| | Sbjct 20167 TTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATTTC 20108 Query 42610 CCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGAT 42669 |||||| | | || ||||| || || ||| ||||| | ||| |||| | ||||| Sbjct 20107 CCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGGTGTTGGGGTAAGGAG 20048 Query 42670 CGGTTCC 42676 || ||| Sbjct 20047 AGGCTCC 20041 >seq28467 Length=106825 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| || | |||| | || | || ||| |||| |||||| Sbjct 81283 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 81342 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| ||| | ||||| || || ||||| |||||| | || || ||||| ||| || Sbjct 81343 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGA 81402 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || |||| || ||| || ||| ||||||||||| || Sbjct 81403 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 81462 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| |||||||||||| |||| | ||||| |||||| Sbjct 81463 TCCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670897799619000