Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4225 122 9e-23 seq24711 118 1e-21 seq5576 113 5e-20 seq7697 96.9 4e-15 seq2313 84.2 2e-11 >seq4225 Length=52512 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || | ||| ||||||| || |||||||| || ||||||||||| Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | ||||||||| ||| |||||| ||||||||| || || || Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || ||| | | || | ||||||| | ||| || Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 2914 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 2915 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2961 >seq24711 Length=27656 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| |||||| || ||||||| ||||| ||||| || ||||||||||| | Sbjct 4878 CCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 4819 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| || || ||||||||| |||||| | ||||| || ||||| Sbjct 4818 AAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGA 4759 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 4758 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAACT 4699 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| ||||| || || || || || |||||| Sbjct 4698 TCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCATA 4651 >seq5576 Length=16168 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||||||| ||| || || | || || || ||||| ||||||||||| | Sbjct 1255 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 1314 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| ||||| |||||||| ||| |||| || | ||| || || ||||| Sbjct 1315 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 1374 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | ||| || ||||| | | ||| || Sbjct 1375 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCGGAGCTTTCGACC 1434 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 143187 |||| || | |||||||| || | ||||| ||||| |||||||| || Sbjct 1435 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCATCGC 1484 >seq7697 Length=17472 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || | || | || || ||||| || ||||||||||| Sbjct 10649 CCACCACGAAGACGCAAGACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCCGCA 10708 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||||| ||||| |||||||| |||| || | |||||||| ||||| Sbjct 10709 AGAGTTCTCCCATCTTCAAGTTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGAGGA 10768 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | | || || Sbjct 10769 ATACCTTCCTTGTCTTGGATCTTAGCTTTCACATTGTCAATAGTGTCGGAGCTCTCCACC 10828 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | |||||||||||||| || || || || || |||||| Sbjct 10829 TCAAGAGTAATGGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATA 10876 >seq2313 Length=70781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAG- 143029 ||| || | ||||| ||||| ||||| || ||||||||||| ||| | | |||| Sbjct 4707 CAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCTAAG---GTTCGACC 4763 Query 143030 -TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| ||||| ||||||||| | ||||| | || ||||| || ||||| |||||||| Sbjct 4764 ATCTTCAAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGTGGTATACCTTCTTT 4823 Query 143089 GTC 143091 ||| Sbjct 4824 GTC 4826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506832033258000