Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2366 87.8 3e-12 seq1742 86.0 9e-12 >seq2366 Length=14026 Score = 87.8 bits (96), Expect = 3e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| |||||| ||| | |||| |||||| | ||||||||| | ||| | Sbjct 9771 TCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTCCTGATCTTA 9712 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGA-TGGCAAA 70303 | | ||||| || || || || |||| || | |||||||| | | ||| ||| || Sbjct 9711 AACTGATGGCCCTTCCTCCATGCCACTTGTTTTCACAGTTTTA-TGTTGCGAATGGAGAA 9653 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 | ||||| |||||||||| | ||||| ||||| ||||||||||| ||||||||| Sbjct 9652 CTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCATTTAACATT 9593 Query 70364 GC 70365 || Sbjct 9592 GC 9591 >seq1742 Length=31261 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 |||||||| ||||| |||||| | || || ||||| || |||| |||||| || Sbjct 28038 GCCATCTTCTGGCTTAAGAAGAGAGGTCTTATGCCGGGTTTGACCTTTTCAAACGAGCTT 28097 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| ||||||||||||| |||||||||||||| Sbjct 28098 ATATCTAGAGACGAGGGCCTCCACTGTGACTTTGC 28132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740792650269000