Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4225 138 8e-28 seq18065 111 1e-19 seq14351 109 4e-19 seq18044 107 1e-18 seq24711 100 2e-16 seq5576 95.1 9e-15 seq8442 89.7 4e-13 seq7697 84.2 2e-11 >seq4225 Length=52512 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| || ||| |||||||| || || ||||| || ||||||||||| Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| |||||||||||||||| || || | ||||||||||| ||||| |||| Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| ||| || ||| || ||| | || || || || | ||| || Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCT-TTCACATTGTCGATTGTGTCCGAAGATTCAAC 2913 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||| || || || || || || ||||| || || || ||||| Sbjct 2914 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2961 >seq18065 Length=21122 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || | ||| ||||| || || || || || || |||||||| || Sbjct 12405 CCACCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 12346 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGT-CGTTTGG 15255 ||| | | | ||||| | |||||| || || | || | | ||||| | || ||| Sbjct 12345 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGCCTCTGTTGATCCGGATGG 12286 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||| ||||| ||| ||||| ||||||| | ||||| || ||| |||| | Sbjct 12285 -ATTCCTTCCTTGTCTTGAATCTTTGC-CTTTACATTGTCTATTGTGTCGGAGCTTTCAA 12228 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 12227 CGTCAAGTGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 12179 >seq14351 Length=15190 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| || | ||| ||||| || || || || || || ||||||||||| | Sbjct 4390 CCTCCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCCGCT 4331 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || || ||||| | ||||| | ||| ||||| ||| Sbjct 4330 AGAGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTTTGCTGGTCCGGAGGA 4271 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||| || | || ||||| || | |||| || Sbjct 4270 ATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCTGAACTTTCGACC 4211 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| ||||| ||||| || ||||| || ||||| || |||||| Sbjct 4210 TCAAGGGTTATGGTCTTACCAGTAAGAGTCTTGACAAAGATCTGCATA 4163 >seq18044 Length=6213 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || | ||| ||||| ||||| || || || || ||||||||||| Sbjct 3078 CCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCA 3137 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | || || | ||||| || || | |||| | || ||||| || Sbjct 3138 AGGGTTCGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGG 3197 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| |||||| ||| || ||| | || ||||| || | || || Sbjct 3198 ATTCCTTCCTTGTCTTGAATTTTAGCT-TTAACATTGTCAATGGTGTCTGAGCTCTCGAC 3256 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| |||||| |||||||| || ||||| || ||||| || ||||| Sbjct 3257 TTCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304 >seq24711 Length=27656 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||| || || ||||| || ||||||||||| | | |||| ||||| Sbjct 4863 AACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTTCTGCCGTCT 4804 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || ||||| | ||||| | || ||||| ||||| || |||||||| Sbjct 4803 TCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 4744 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| ||| | || || || ||| |||| || || || ||||| || Sbjct 4743 TGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAACTTCCAAAGTAATAGTC 4684 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || ||||| || |||||| Sbjct 4683 TTGCCCGTCAAGGTCTTAACAAAGATCTGCATA 4651 >seq5576 Length=16168 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || || |||||||| || | | | | ||||||| || Sbjct 595 TGAAGTGTTGACTCTTTCTGAATATTGTAATCAGCTAAAGTCCGACCATCTTCTAGCTGC 654 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || || | || | | |||||||| |||||| ||||||||||| || ||| Sbjct 655 TTCCCGGCAAAGATTAGCCTCTGTTGGTCCGGTGGAATCCCTTCTTTGTCTTGTATCTTT 714 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| || | || || ||||| | ||||| || | ||||||||||| ||||| Sbjct 715 GC-CTTCACGTTATCAATCGTATCAGAGCTCTCTACCTCAAGAGTAATGGTTTTCCCTGT 773 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || |||||| ||||| |||||||| Sbjct 774 CAAAGTTTTGACAAAGATTTGCAT 797 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 || |||||||| | | ||| || || || || || || ||||| ||||||||||| || Sbjct 1255 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 1314 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | |||| || | ||||| || || | || | | ||||||||| || Sbjct 1315 AAGG-TACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGG 1373 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| || ||| ||| || |||||| ||| ||| |||| || Sbjct 1374 GATTCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCGGAGCTTTCGAC 1433 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || |||||||| || || |||||||| Sbjct 1434 CTCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 1481 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| || |||||||| ||| | | | || || | ||| Sbjct 823 TGAAGTGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCGAGCTGT 882 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | |||| | |||||||| | || ||||| ||||| ||| ||| Sbjct 883 TTACCAGCGAAGATCAGTCTCTGTTGGTCCGGAGTGATCCCTTCCTTGTCTTGAATCTTG 942 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| || | || || ||||||||||||||||| || || Sbjct 943 GCCTTGACGTTGTCGATGGTGTCTGAGCTCTCAACTTCTAAGGTAATGGTTTTGCCAGTT 1002 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||||| ||||| |||||||| Sbjct 1003 AAGGTTTTCACAAAGATTTGCAT 1025 >seq8442 Length=60656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | || || ||||| || || || || || || || |||||||| | Sbjct 43805 CCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCTCCA 43864 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| |||| || | |||||| |||||| | || | | |||| ||| || Sbjct 43865 AGGGTTCGACCGTCCTCGAGTTGTTTACCAGCGAAGATGAGCCTCTGTTCGTCTGGAGGG 43924 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || || ||| || || ||||| || | || || Sbjct 43925 ATCCCTTCCTTATCTTGGATCTTCGCCTTGACGTCGTCAATGGTGTCTGAGCTCTCAACT 43984 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||||| |||||||| || || ||||| |||| |||||||| Sbjct 43985 TCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAACTATTTGCAT 44031 >seq7697 Length=17472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || ||||||||||| ||| ||||| | ||||| | ||| Sbjct 10673 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCTCCCATCTTCAAGTTGC 10732 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || |||||| | || | | || || || ||||| ||||| ||||| || || Sbjct 10733 TTACCAGCGAAGATAAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTA 10792 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || || ||| | || || || | |||||||| || || || Sbjct 10793 GCT-TTCACATTGTCAATAGTGTCGGAGCTCTCCACCTCAAGAGTAATGGTCTTGCCGGT 10851 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||| || ||||| || |||||| Sbjct 10852 CAAAGTCTTCACAAAGATCTGCATA 10876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362052185452275