Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq18044 98.7 8e-16 seq24711 89.7 4e-13 seq18065 89.7 4e-13 seq5576 84.2 2e-11 >seq18044 Length=6213 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| |||| || || ||||| ||||| |||||||| || Sbjct 3078 CCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCA 3137 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||| ||||||||||| ||| | || || |||||||| ||| || Sbjct 3138 AGGGTTCGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGG 3197 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| |||||| ||| || | | | | || || ||| | Sbjct 3198 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACT 3257 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| |||||||| || | ||| |||||||| || ||||| Sbjct 3258 TCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304 >seq24711 Length=27656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | |||||| ||||| || |||||||||||||||| || |||| Sbjct 4407 AACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCGTCT 4348 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| || ||||| || | || | ||||||||||||| || | || || || || Sbjct 4347 TCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 4288 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| ||| ||| || | | ||| ||||| | ||| |||| || || || Sbjct 4287 TGAATCTTCGCTTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGATTGTC 4228 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | |||||| ||||| || ||||| Sbjct 4227 TTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 4196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| |||||| |||||||||||||| |||||||| || |||| || | ||| Sbjct 5091 AACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGACCATCC 5032 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || ||| | || | |||||||| ||| || | || || || || Sbjct 5031 TCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCCTTATCT 4972 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || || || | | | | ||| || | |||| |||| ||||||||| Sbjct 4971 TGGATCTTTGCCTTCACGTTGTCAATAGTGTCAGAACTCTCCACCTCGAGGGTAATGGTC 4912 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || || || || || |||||||| Sbjct 4911 TTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4880 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| || | |||||||| || || || |||||||| |||| ||| || |||| Sbjct 4863 AACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTTCTGCCGTCT 4804 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| ||||| ||| | || | ||||||||| ||| || | ||||||||||| Sbjct 4803 TCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 4744 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || || || | | | | ||| ||| || ||| | ||||| || Sbjct 4743 TGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAACTTCCAAAGTAATAGTC 4684 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || || ||||| || ||||| Sbjct 4683 TTGCCCGTCAAGGTCTTAACAAAGATCTGCAT 4652 >seq18065 Length=21122 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || ||||||||||| | ||||||||||| | ||| | ||||| || || Sbjct 15083 GTGCAGAGTTGACTCCTTTTGGGTGTTGTAATCCGCAAAGGTTCGACCATCCTCAAGTTG 15024 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 |||||| ||| | || | ||||||||| ||| || | || ||||| || ||| || Sbjct 15023 TTTACCGGCAAAGATTAATCTCTGCTGGTCCGGAGGGATCCCTTCTTTATCTTGAATCTT 14964 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 | ||| || | | | | ||||| ||| ||| | ||||||||||||||| || Sbjct 14963 CGCTTTAACATTGTCAATGGTATCTGACCTCTCAACTTCTAGGGTAATGGTTTTACCCGT 14904 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 | | |||||||| || ||||| Sbjct 14903 AAGCGGCTTGACAAATATCTGCAT 14880 >seq5576 Length=16168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| | | |||| ||| | || ||||||||||| || |||||||| ||| Sbjct 1255 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 1314 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||||||||| ||| | ||||| || || || ||| || Sbjct 1315 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 1374 Query 18935 ACGCCCTCTTTGTC 18948 | || |||||||| Sbjct 1375 ATTCCTTCTTTGTC 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414427411262350