Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4225 98.7 6e-16 seq24711 89.7 3e-13 seq5576 89.7 3e-13 >seq4225 Length=52512 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| || | |||||||| | || || ||||| || || |||||||||| Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | ||| || ||||| || || ||| || |||||||||||||||| || Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || |||| | ||| || | | || ||||| | || ||| Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 2914 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || ||||| || ||||| ||||| || ||||| Sbjct 2915 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2961 >seq24711 Length=27656 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || |||||||||||||| | || |||||||| || || |||||||||| Sbjct 4879 ACCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGC 4820 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | ||| || | ||||| ||| ||| || || | |||||||||| || Sbjct 4819 CAAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGG 4760 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || ||||| || |||| ||| || || | | ||| |||||| | || Sbjct 4759 AATACCCTCTTTGTCTTGAATCTTGGCC---TTCACATTGTCAATAGTGTCGGAGCTTTC 4703 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| ||| || || || ||||| | || || || || || ||||| Sbjct 4702 AACTTCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCAT 4652 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || || || ||||||||||| | ||| | || | Sbjct 4410 CGCAACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCG 4351 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| ||| || || || | ||||| |||| || || ||||| || Sbjct 4350 TCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTA 4291 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| | ||| || | | ||||| || || || || ||||| || Sbjct 4290 TCCTGAATCTTCGCTTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGATT 4231 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || |||||||| || || || ||||| Sbjct 4230 GTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 4196 >seq5576 Length=16168 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || |||| ||||| || | || ||||| ||||| || |||||||||| Sbjct 1254 ACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGC 1313 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | ||| || | || || || ||| || | | ||| ||||||| || Sbjct 1314 CAAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGG 1373 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || ||| |||| | || ||| | |||||| | || Sbjct 1374 GATTCCTTCTTTGTCTTGGATCTTGGCCT---TGACGTTTTCTACGGTGTCGGAGCTTTC 1430 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| || || |||||||||||||| ||||| |||||||| Sbjct 1431 GACCTCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 1481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318665806189950