Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq18044 104 2e-17 seq14351 100 2e-16 seq24711 91.5 1e-13 seq18065 89.7 4e-13 seq4225 82.4 5e-11 >seq18044 Length=6213 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| || | |||||||| || || || || ||||| || ||||| | Sbjct 3077 ACCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATC-TG 3135 Query 43954 TAATTGA-CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | || |||| || | ||||| || ||||| |||| || ||||||||| ||| Sbjct 3136 CAAGGGTTCGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAG 3195 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| || ||| |||||| ||| || | ||| || |||| ||| | Sbjct 3196 GGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGA 3255 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | |||||||||||||| || | |||||| |||||||| ||||| Sbjct 3256 CTTCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304 >seq14351 Length=15190 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| || | |||||||| || || ||| || || || || ||||| Sbjct 4391 ACCTCCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCCGC 4332 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| |||| || || || ||||| ||||||| |||||||||| |||| Sbjct 4331 TAGAGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTTTGCTGGTCCGGAGG 4272 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| || || ||||| || ||| || |||| || || Sbjct 4271 AATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCTGAACTTTCGAC 4212 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || ||||| || | |||||| ||||| || ||||| Sbjct 4211 CTCAAGGGTTATGGTCTTACCAGTAAGAGTCTTGACAAAGATCTGCAT 4164 >seq24711 Length=27656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||| | ||| || || ||| || || ||||| ||||| | ||| |||| || Sbjct 4633 CACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATCCTC 4574 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | ||| ||||| || || ||||||| ||||| ||| |||| | |||||| |||||| Sbjct 4573 AAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTG 4514 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || || || | ||| ||||| | |||||| || | ||||| ||||| Sbjct 4513 AATCTTGGCCTTAACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTAATAGTTTT 4454 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || || ||||||||||| || ||||| Sbjct 4453 ACCAGTCAAGGTCTTCACAAAGATCTGCAT 4424 >seq18065 Length=21122 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||| | | ||||||||| || || |||||| |||| |||||||| | Sbjct 12633 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTTAGAATGTTATAATCCGCT 12574 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || || |||| || | ||||| || ||||| || | | ||||||||| |||| Sbjct 12573 AAAGTCCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGAGGG 12514 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||| | || || | ||| || | || ||| || Sbjct 12513 ATCCCTTCTTTATCTTGAATCTCCGCCTTAACATTGTCAATGGTGTATGAGCTCTCAACT 12454 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||||||||| | ||||| |||||||| ||||| Sbjct 12453 TCTAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCAT 12407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | |||||| || ||||| || || | ||||||||| |||| | ||||||| Sbjct 15036 CATCCTCAAGTTGTTTACCGGCAAAGATTAATCTCTGCTGGTCCGGAGGGATCCCTTCTT 14977 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||| || ||| || | ||| ||||||| | ||| || || | |||| Sbjct 14976 TATCTTGAATCTTCGCTTTAACATTGTCAATGGTATCTGACCTCTCAACTTCTAGGGTAA 14917 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||||||| || | | ||| |||||||| ||||| Sbjct 14916 TGGTTTTACCCGTAAGCGGCTTGACAAATATCTGCAT 14880 >seq4225 Length=52512 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||| || |||||||| ||||| ||||| || || || ||||| Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | | || || |||||||| || ||||| ||||| |||||||||||| | || Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| ||| || ||| || | | | || || | | || || Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 2914 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTC 44124 || | || ||||| || || |||| || ||||| || || ||||| || Sbjct 2915 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTC 2964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354653181158700