Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq24711 89.7 4e-13 seq2313 89.7 4e-13 seq7697 86.0 5e-12 >seq24711 Length=27656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || |||| | |||||||||||| || ||||| ||||| || ||||||||||| || Sbjct 4878 CCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 4819 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||| | || || || ||| | || | ||||| || || || Sbjct 4818 AAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGA 4759 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| ||| || ||||| | | ||| || ||| ||| | Sbjct 4758 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAACT 4699 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| || ||||| ||||| || || ||||| || ||||| Sbjct 4698 TCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCAT 4652 >seq2313 Length=70781 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| |||| |||| | |||||| || | ||| || ||||| ||||| || ||| Sbjct 4681 TTAATCATGGTTCCACCTCTGAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATG 4740 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | ||| | |||||| | ||| || || ||| |||| ||||||||| Sbjct 4741 TTGTAATCAGCTAAGGTTCGACCATCTTCAAGTTGCTTACCAGCAAAAATCAGCCTCTGT 4800 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||||||||| Sbjct 4801 TGATCAGGTGGTATACCTTCTTTGTC 4826 >seq7697 Length=17472 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || ||||| || ||||||||||| | | |||| | |||||| | ||| Sbjct 10673 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCTCCCATCTTCAAGTTGC 10732 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || | ||||||||||| ||||| || | ||||| ||||| || || Sbjct 10733 TTACCAGCGAAGATAAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTA 10792 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | | ||| || ||| || | ||| || | |||||||| |||||||| Sbjct 10793 GCTTTCACATTGTCAATAGTGTCG-GAGCTCTCCACCTCAAGAGTAATGGTCTTGCCGGT 10851 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| || || ||||| || ||||| Sbjct 10852 CAAAGTCTTCACAAAGATCTGCAT 10875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419440052735775