Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 150 2e-31
seq1742 86.0 5e-12
>seq18099
Length=159039
Score = 150 bits (166), Expect = 2e-31
Identities = 554/858 (65%), Gaps = 21/858 (2%)
Strand=Plus/Minus
Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906
||||||||| ||| ||||| || | |||||| || |||||||| || || || ||||
Sbjct 20956 CATAACAGAAGCTTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTG 20897
Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCC 12966
||| || ||||| |||| || ||||| || || ||| ||| | ||||
Sbjct 20896 TAAACTTATCAACTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCC 20837
Query 12967 TAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTT 13026
| | |||||| || || ||||||||||| || ||||| |||| || |||| ||
Sbjct 20836 AAGCGCACCTAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATT 20777
Query 13027 CATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGC 13086
||| || | || ||| | || || || ||| | | | || || ||||| ||
Sbjct 20776 CATCCCAACCAACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGC 20717
Query 13087 TTCGATAACTATG----TCTCTTATTACGTTCTCTAATGGAGG-ATTTGATAGATGCTTA 13141
|| || || || || || | || |||| | | | | ||| ||
Sbjct 20716 ATCACACACAATCGACTTCACTCTTTCC--TCACTAAGCTTCGTACGTAACAGAG---TA 20662
Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201
| |||| ||| || ||||||||||| | ||||| ||||| |||| |||||| ||
Sbjct 20661 TAAATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAG 20602
Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261
|| |||| ||| ||||| || || ||||| |||| ||| || || | | || |||||
Sbjct 20601 AAAGTTAAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCA 20542
Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321
|| || ||||| |||||||| || ||||||| | | |||| | | || | |
Sbjct 20541 GAGAAGAATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGAT 20482
Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381
| || ||||| | | ||||| | ||||| | |||| || || ||||
Sbjct 20481 ---CCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCG 20425
Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441
||||| ||||||| || | |||| || | ||| || || || || | || |||
Sbjct 20424 ATTGCACGGAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGA-GAAGAAG 20366
Query 13442 -CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500
|||||| |||||||| ||||| || || || |||||||| || || || | ||
Sbjct 20365 AGAATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGC 20306
Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560
|| || || || || || || |||| | || | ||||||| || || |||||
Sbjct 20305 TTCGGAGACTTGTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTC 20246
Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt---ttttttCGTTTTCTGACAA 13617
| || || || ||||| |||| ||| || || || | || | ||| | ||| |
Sbjct 20245 AGATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGT-TGAGA- 20188
Query 13618 CTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677
||| ||| || | |||| ||| | ||| || || || ||||||| || || ||
Sbjct 20187 -TTTTCCCAGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGC 20129
Query 13678 AACAGCCTTCTTATACAT 13695
| || ||||| |||||
Sbjct 20128 TTCGGCTTTCTTGTACAT 20111
>seq1742
Length=31261
Score = 86.0 bits (94), Expect = 5e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209
||| ||||| |||||||| | || || |||||| ||| |||||||||||||| || |
Sbjct 28136 ACAAGCAAAGTCACAGTGGAGGCCCTCGTCTCTAGATATAAGCTCGTTTGAAAAGGTCAA 28077
Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249
|||||||||||| |||| || |||| ||| || || |||
Sbjct 28076 ACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCA 28037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430831256492550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |