Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq18099 150 2e-31 seq1742 86.0 5e-12 >seq18099 Length=159039 Score = 150 bits (166), Expect = 2e-31 Identities = 554/858 (65%), Gaps = 21/858 (2%) Strand=Plus/Minus Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906 ||||||||| ||| ||||| || | |||||| || |||||||| || || || |||| Sbjct 20956 CATAACAGAAGCTTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTG 20897 Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCC 12966 ||| || ||||| |||| || ||||| || || ||| ||| | |||| Sbjct 20896 TAAACTTATCAACTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCC 20837 Query 12967 TAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTT 13026 | | |||||| || || ||||||||||| || ||||| |||| || |||| || Sbjct 20836 AAGCGCACCTAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATT 20777 Query 13027 CATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGC 13086 ||| || | || ||| | || || || ||| | | | || || ||||| || Sbjct 20776 CATCCCAACCAACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGC 20717 Query 13087 TTCGATAACTATG----TCTCTTATTACGTTCTCTAATGGAGG-ATTTGATAGATGCTTA 13141 || || || || || || | || |||| | | | | ||| || Sbjct 20716 ATCACACACAATCGACTTCACTCTTTCC--TCACTAAGCTTCGTACGTAACAGAG---TA 20662 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 | |||| ||| || ||||||||||| | ||||| ||||| |||| |||||| || Sbjct 20661 TAAATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAG 20602 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || |||| ||| ||||| || || ||||| |||| ||| || || | | || ||||| Sbjct 20601 AAAGTTAAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCA 20542 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || || ||||| |||||||| || ||||||| | | |||| | | || | | Sbjct 20541 GAGAAGAATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGAT 20482 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | || ||||| | | ||||| | ||||| | |||| || || |||| Sbjct 20481 ---CCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCG 20425 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 ||||| ||||||| || | |||| || | ||| || || || || | || ||| Sbjct 20424 ATTGCACGGAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGA-GAAGAAG 20366 Query 13442 -CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 |||||| |||||||| ||||| || || || |||||||| || || || | || Sbjct 20365 AGAATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGC 20306 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 || || || || || || || |||| | || | ||||||| || || ||||| Sbjct 20305 TTCGGAGACTTGTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTC 20246 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt---ttttttCGTTTTCTGACAA 13617 | || || || ||||| |||| ||| || || || | || | ||| | ||| | Sbjct 20245 AGATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGT-TGAGA- 20188 Query 13618 CTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 ||| ||| || | |||| ||| | ||| || || || ||||||| || || || Sbjct 20187 -TTTTCCCAGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGC 20129 Query 13678 AACAGCCTTCTTATACAT 13695 | || ||||| ||||| Sbjct 20128 TTCGGCTTTCTTGTACAT 20111 >seq1742 Length=31261 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||| |||||||| | || || |||||| ||| |||||||||||||| || | Sbjct 28136 ACAAGCAAAGTCACAGTGGAGGCCCTCGTCTCTAGATATAAGCTCGTTTGAAAAGGTCAA 28077 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 |||||||||||| |||| || |||| ||| || || ||| Sbjct 28076 ACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCA 28037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430831256492550