Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq24711 109 5e-19
seq16226 98.7 8e-16
>seq24711
Length=27656
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
||||| || ||||| || ||||| || || |||||||| ||||| || ||||
Sbjct 4407 AACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCGTCT 4348
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|||| |||||||| || | || || | |||||||||| || | || |||||| |||
Sbjct 4347 TCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 4288
Query 48635 ATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693
||| ||| |||| | | | | || ||||| | | ||| ||||| || || ||
Sbjct 4287 TGAATCTTC-GCTTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGATTGT 4229
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| |||||||||||||||||||| |||||||||
Sbjct 4228 CTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 4195
>seq16226
Length=39664
Score = 98.7 bits (108), Expect = 8e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| |||||||| || | ||||| |||||||| || || |
Sbjct 10945 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 11004
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|||| ||||||||| ||| || | || |||||||||| || || ||||| |
Sbjct 11005 GATTAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 11064
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| || || || | ||| ||| | || ||||| || ||||||||||| |||||
Sbjct 11065 GTCAATTGTGTCCGAGCTCTCAACCTCAAGGGTAATGGTCTTTCCGGTGAGAGTCTTCAC 11124
Query 48715 AAAAATCTGCAT 48726
|||||||||||
Sbjct 11125 GAAAATCTGCAT 11136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421103469178775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |