Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq24711 109 5e-19 seq16226 98.7 8e-16 >seq24711 Length=27656 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || ||||| || ||||| || || |||||||| ||||| || |||| Sbjct 4407 AACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCGTCT 4348 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| |||||||| || | || || | |||||||||| || | || |||||| ||| Sbjct 4347 TCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 4288 Query 48635 ATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| ||| |||| | | | | || ||||| | | ||| ||||| || || || Sbjct 4287 TGAATCTTC-GCTTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGATTGT 4229 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||||||||||||||| ||||||||| Sbjct 4228 CTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 4195 >seq16226 Length=39664 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| |||||||| || | ||||| |||||||| || || | Sbjct 10945 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 11004 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 |||| ||||||||| ||| || | || |||||||||| || || ||||| | Sbjct 11005 GATTAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 11064 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | ||| ||| | || ||||| || ||||||||||| ||||| Sbjct 11065 GTCAATTGTGTCCGAGCTCTCAACCTCAAGGGTAATGGTCTTTCCGGTGAGAGTCTTCAC 11124 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 11125 GAAAATCTGCAT 11136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421103469178775