Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq4131 123 1e-23
seq17416 116 2e-21
seq20714 114 7e-21
seq21343 111 8e-20
seq25506 109 3e-19
seq17839 109 3e-19
seq3752 109 3e-19
seq27856 107 1e-18
seq27582 107 1e-18
seq25094 105 3e-18
seq20720 104 1e-17
seq17909 104 1e-17
seq3399 104 1e-17
seq18886 102 4e-17
seq11725 102 4e-17
seq28657 100 1e-16
seq27146 100 1e-16
>seq4131
Length=60598
Score = 123 bits (136), Expect = 1e-23
Identities = 82/92 (89%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 37173 AAAAAAAAATTAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 37114
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||||||| |||||||||||||||||||| ||
Sbjct 37113 GACGCTCTAACCAACTGAGCTAATGGGCCTTC 37082
>seq17416
Length=97611
Score = 116 bits (128), Expect = 2e-21
Identities = 79/88 (90%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 11443 TAAAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||
Sbjct 53420 TAAAAAATATAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACG 53361
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 53360 ACGCTCTAACCAACTGAGCTAATGGGCC 53333
>seq20714
Length=15752
Score = 114 bits (126), Expect = 7e-21
Identities = 79/89 (89%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| || ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 10697 AAAAAAAAATTAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 10640
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 10639 GACGCTCTAACCAACTGAGCTAATGGGCC 10611
Score = 91.5 bits (100), Expect = 8e-14
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | |||| || |||| |||||||||||||||||||||||| ||||||
Sbjct 9585 TGGCCCATGCAGCTTTCGATTCTGCGACGTTCGCGTTATTAGCACGACGCTCTAACCAAC 9526
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 9525 TGAGCTAATGGGCC 9512
>seq21343
Length=39003
Score = 111 bits (122), Expect = 8e-20
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507
||| |||| |||||||| | | |||||||| ||||||||||||||||||||||||||||
Sbjct 11270 AATTAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 11212
Query 11508 TRACCAACTGAGCTAATGGGCC 11529
| ||||||||||||||||||||
Sbjct 11211 TAACCAACTGAGCTAATGGGCC 11190
>seq25506
Length=8598
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 5938 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5879
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 5878 TGAGCTAATGGGCC 5865
>seq17839
Length=756
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 659 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 718
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 719 TGAGCTAATGGGCC 732
>seq3752
Length=22131
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 11331 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 11390
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 11391 TGAGCTAATGGGCC 11404
>seq27856
Length=29784
Score = 107 bits (118), Expect = 1e-18
Identities = 80/94 (85%), Gaps = 3/94 (3%)
Strand=Plus/Plus
Query 11442 ATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
||||||||| ||| ||||| || | ||||||||||| ||||||||||||||||||
Sbjct 12768 ATAAAAAATTAAAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGC 12827
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||||||||| ||||||||||||||| |||| ||
Sbjct 12828 ACGACGCTCTAACCAACTGAGCTAATAGGCCTTC 12861
>seq27582
Length=38172
Score = 107 bits (118), Expect = 1e-18
Identities = 89/107 (83%), Gaps = 8/107 (7%)
Strand=Plus/Plus
Query 11431 ATATAGAA-TTAATAAAAA------ATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGA 11482
||| |||| |||| ||||| ||||||| ||| ||||| | | |||||||| |||
Sbjct 11308 ATAGAGAAGTTAAAAAAAAGGTATTATCAAATATGGTCCATGCAGGTTTCGAACCTGCGA 11367
Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 11368 CCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGTTAATGGGCC 11414
>seq25094
Length=44330
Score = 105 bits (116), Expect = 3e-18
Identities = 77/89 (87%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||| || |||| |||| || | ||||||||||| ||||||||||||||||||||
Sbjct 19212 AATAAACAAAAAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 19270
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||| ||||
Sbjct 19271 GACGCTCTAACCAACTGAGCTAATAGGCC 19299
>seq20720
Length=241989
Score = 104 bits (114), Expect = 1e-17
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||||| || ||||| || | ||||||||||| |||||||||||||||||||||||||
Sbjct 31743 AAAATATAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 31802
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||||||||||| ||||
Sbjct 31803 TCTAACCAACTGAGCTAATAGGCC 31826
>seq17909
Length=137484
Score = 104 bits (114), Expect = 1e-17
Identities = 76/88 (86%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
||||| || ||| ||||| || | ||||||||||| |||||||||||||||||||||
Sbjct 12833 TAAAACATAAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACG 12774
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||| ||||
Sbjct 12773 ACGCTCTAACCAACTGAGCTAATAGGCC 12746
>seq3399
Length=23127
Score = 104 bits (114), Expect = 1e-17
Identities = 79/93 (85%), Gaps = 1/93 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||| | | || |||| |||| || | ||||||||||| ||||||||||||||||
Sbjct 14206 AATTAAAAGAGAAAAAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTA 14148
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||| ||||
Sbjct 14147 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 14115
>seq18886
Length=46761
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 27012 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 26953
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 26952 CAACTGAGCTAATAGGCC 26935
>seq11725
Length=61113
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 30560 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 30619
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 30620 CAACTGAGCTAATAGGCC 30637
>seq28657
Length=142947
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||| || | ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 18825 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18884
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 18885 TGAGCTAATAGGCC 18898
Score = 98.7 bits (108), Expect = 5e-16
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 18666 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 18725
Query 11512 CAACTGAGCTAATGGGCC 11529
|| |||||||||| ||||
Sbjct 18726 CAGCTGAGCTAATAGGCC 18743
>seq27146
Length=73261
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||| || | ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 25793 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 25852
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 25853 TGAGCTAATAGGCC 25866
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261399496261900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |