Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4131 123 1e-23 seq17416 116 2e-21 seq20714 114 7e-21 seq21343 111 8e-20 seq25506 109 3e-19 seq17839 109 3e-19 seq3752 109 3e-19 seq27856 107 1e-18 seq27582 107 1e-18 seq25094 105 3e-18 seq20720 104 1e-17 seq17909 104 1e-17 seq3399 104 1e-17 seq18886 102 4e-17 seq11725 102 4e-17 seq28657 100 1e-16 seq27146 100 1e-16 >seq4131 Length=60598 Score = 123 bits (136), Expect = 1e-23 Identities = 82/92 (89%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 37173 AAAAAAAAATTAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 37114 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| |||||||||||||||||||| || Sbjct 37113 GACGCTCTAACCAACTGAGCTAATGGGCCTTC 37082 >seq17416 Length=97611 Score = 116 bits (128), Expect = 2e-21 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11443 TAAAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 53420 TAAAAAATATAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACG 53361 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 53360 ACGCTCTAACCAACTGAGCTAATGGGCC 53333 >seq20714 Length=15752 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 10697 AAAAAAAAATTAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 10640 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 10639 GACGCTCTAACCAACTGAGCTAATGGGCC 10611 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | |||| || |||| |||||||||||||||||||||||| |||||| Sbjct 9585 TGGCCCATGCAGCTTTCGATTCTGCGACGTTCGCGTTATTAGCACGACGCTCTAACCAAC 9526 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 9525 TGAGCTAATGGGCC 9512 >seq21343 Length=39003 Score = 111 bits (122), Expect = 8e-20 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 ||| |||| |||||||| | | |||||||| |||||||||||||||||||||||||||| Sbjct 11270 AATTAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 11212 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | |||||||||||||||||||| Sbjct 11211 TAACCAACTGAGCTAATGGGCC 11190 >seq25506 Length=8598 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5938 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5879 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 5878 TGAGCTAATGGGCC 5865 >seq17839 Length=756 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 659 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 718 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 719 TGAGCTAATGGGCC 732 >seq3752 Length=22131 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 11331 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 11390 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 11391 TGAGCTAATGGGCC 11404 >seq27856 Length=29784 Score = 107 bits (118), Expect = 1e-18 Identities = 80/94 (85%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||||| ||| ||||| || | ||||||||||| |||||||||||||||||| Sbjct 12768 ATAAAAAATTAAAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGC 12827 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||| ||||||||||||||| |||| || Sbjct 12828 ACGACGCTCTAACCAACTGAGCTAATAGGCCTTC 12861 >seq27582 Length=38172 Score = 107 bits (118), Expect = 1e-18 Identities = 89/107 (83%), Gaps = 8/107 (7%) Strand=Plus/Plus Query 11431 ATATAGAA-TTAATAAAAA------ATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGA 11482 ||| |||| |||| ||||| ||||||| ||| ||||| | | |||||||| ||| Sbjct 11308 ATAGAGAAGTTAAAAAAAAGGTATTATCAAATATGGTCCATGCAGGTTTCGAACCTGCGA 11367 Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 11368 CCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGTTAATGGGCC 11414 >seq25094 Length=44330 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| || |||| |||| || | ||||||||||| |||||||||||||||||||| Sbjct 19212 AATAAACAAAAAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 19270 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 19271 GACGCTCTAACCAACTGAGCTAATAGGCC 19299 >seq20720 Length=241989 Score = 104 bits (114), Expect = 1e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||| || | ||||||||||| ||||||||||||||||||||||||| Sbjct 31743 AAAATATAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 31802 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 31803 TCTAACCAACTGAGCTAATAGGCC 31826 >seq17909 Length=137484 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||| || ||| ||||| || | ||||||||||| ||||||||||||||||||||| Sbjct 12833 TAAAACATAAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACG 12774 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 12773 ACGCTCTAACCAACTGAGCTAATAGGCC 12746 >seq3399 Length=23127 Score = 104 bits (114), Expect = 1e-17 Identities = 79/93 (85%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| | | || |||| |||| || | ||||||||||| |||||||||||||||| Sbjct 14206 AATTAAAAGAGAAAAAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTA 14148 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 14147 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 14115 >seq18886 Length=46761 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 27012 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 26953 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 26952 CAACTGAGCTAATAGGCC 26935 >seq11725 Length=61113 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 30560 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 30619 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 30620 CAACTGAGCTAATAGGCC 30637 >seq28657 Length=142947 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 18825 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18884 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 18885 TGAGCTAATAGGCC 18898 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 18666 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 18725 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 18726 CAGCTGAGCTAATAGGCC 18743 >seq27146 Length=73261 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 25793 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 25852 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25853 TGAGCTAATAGGCC 25866 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261399496261900