Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19568 187 4e-43 seq19682 140 5e-29 seq6948 131 3e-26 seq10482 118 2e-22 seq18960 98.7 2e-16 >seq19568 Length=687 Score = 187 bits (206), Expect = 4e-43 Identities = 202/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || || |||||||| |||||||||||||| || || Sbjct 600 CGCCAAGCGTCATCGTAAGGTGCTGCGTGACAACATCCAGGGAATCACCAAGCCCGCCAT 541 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| |||||||||||||||||| |||| || | |||| || |||| Sbjct 540 CCGTCGTCTGGCTCGCCGTGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 481 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 480 CCGTGGTGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 421 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || ||||| || Sbjct 420 GCACGCCAAGAGGAAGACCGTGACTGCCATGGACGTAGTCTACGCCCTCAAGCGTCAGGG 361 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 360 ACGTACCCTGTACGGTTTCGGAGGTTAA 333 >seq19682 Length=114252 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||| | ||||||| Sbjct 58082 GAGACAACATCCAAGGAATCACTAAGCCTGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 58023 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | ||| ||| |||| || |||| |||| || | |||||||| | Sbjct 58022 TCAAGCGTATTAGTGGTTTGATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTTTTGG 57963 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||||||| | || ||||||||||||| | |||||||||||| Sbjct 57962 AGAACGTGATTCGTGATGCTGTGACTTACACCGAGCACGCTAGGAGGAAGACTGTCACCG 57903 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | ||||| | | | || || || ||| ||| Sbjct 57902 CCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTCTACGGATTCGGAGGTT 57843 Query 16698 AA 16699 || Sbjct 57842 AA 57841 >seq6948 Length=13051 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||||||||||||||| || || || || | |||||||| | ||||||| Sbjct 1891 GAGACAACATCCAAGGAATCACCAAACCTGCGATTCGGAGGTTGGCTCGTAGAGGTGGAG 1950 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 1951 TGAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGG 2010 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| ||| | || ||||||||||||| | |||||||| || Sbjct 2011 AGAACGTGATTCGTGACGCTGTGACTTACACCGAGCACGCTAGGAGGAAGACTGTGACTG 2070 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | ||||| | | | || ||||||||| ||| Sbjct 2071 CCATGGATGTTGTTTACGCGCTCAAGAGGCAAGGAAGAACTCTCTACGGTTTTGGAGGTT 2130 Query 16698 AA 16699 || Sbjct 2131 AA 2132 >seq10482 Length=19995 Score = 118 bits (130), Expect = 2e-22 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||| ||||| || || ||||| || || ||| | | || | | || Sbjct 4823 TCTCCGTGATAACATTCAAGGGATTACGAAGCCGGCGATTCGTAGATTAGCGAGAAGAGG 4764 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| | ||||||| |||| ||||| | ||| | |||||||||||| || Sbjct 4763 TGGTGTGAAGCGTATAAGTGGATTGATCTACGAAGAAACTCGAGGTGTTTTGAAGATTTT 4704 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| || || | ||||||| | || || ||||| || | | |||||||| Sbjct 4703 TCTTGAGAATGTGATTCGTGATGCTGTTACTTACACAGAGCATGCGAGGAGGAAGACTGT 4644 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | || ||||| ||||| | ||||| || | | ||||| || || Sbjct 4643 CACGGCGATGGATGTTGTTTATGCTTTGAAGAGACAAGGACGAACTCTCTATGGATTCGG 4584 Query 16693 AAGTTAAT 16700 ||| || Sbjct 4583 TGGTTGAT 4576 >seq18960 Length=20521 Score = 98.7 bits (108), Expect = 2e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| |||| ||||||||||| || || ||||| || || Sbjct 12537 GCAAAGAGACATCGGAAAGTTCTCAGAGACAACATCCAAGGTATTACGAAGCCTGCGATT 12596 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || | | || || || || ||| || ||| ||| |||| ||||| | | Sbjct 12597 CGTCGTTTAGCGAGAAGAGGAGGCGTGAAACGTATCAGTGGTTTGATCTACGAAGAAACT 12656 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | |||||||| || ||| ||| || | ||| || | || || ||| Sbjct 12657 CGCGGTGTTCTCAAGATCTTTCTAGAGAACGTGATTCGTGACGCCGTTACTTACACGGAG 12716 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || || ||||| || | |||||| | || || || Sbjct 12717 CACGCTCGCCGGAAAACTGTGACGGCGATGGATGTTGTTTACGC 12760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79048890816075