Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq6667 589 3e-163
seq11714 587 1e-162
>seq6667
Length=26159
Score = 589 bits (652), Expect = 3e-163
Identities = 742/1012 (73%), Gaps = 18/1012 (2%)
Strand=Plus/Minus
Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934
||||||||||| | | || |||||||| ||||| ||||||||||| ||| | || |
Sbjct 10114 TGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 10055
Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994
|||| ||| ||||| || | || || ||| | || || ||||| ||||| || |
Sbjct 10054 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 9995
Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051
|||| || || || ||||| ||||| || | ||||| ||||| | || || |
Sbjct 9994 GGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTG 9938
Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111
| ||||||||||||||| || | | | |||||| | | |||| |||||||||||
Sbjct 9937 CCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAG 9878
Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171
| ||||||||| | || |||| ||| | || || || ||| ||||||| || ||||
Sbjct 9877 CACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCC 9818
Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTA 138230
|||| || || | || || || ||| | || || ||||| | |||| || | |
Sbjct 9817 ACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTT- 9759
Query 138231 GGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCG 138288
|| | || || || || |||||||||||||||||||| || ||||| || || |
Sbjct 9758 --CAATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTG 9701
Query 138289 TGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGG 138348
| ||||| || ||||| | |||||||| ||||||||||||| || |||||||| |
Sbjct 9700 TCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAG 9641
Query 138349 CAGCAATCTTCCGATTC---CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACC 138405
| || || || |||||| || || |||| |||||||| |||| ||||| | ||||
Sbjct 9640 CGGCTATATTTCGATTCATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACC 9584
Query 138406 CCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATG 138465
| |||||||||||||| || || ||| | || || | || ||||| || ||||||||||
Sbjct 9583 CATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATG 9524
Query 138466 GTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCAT 138525
||||||| |||||||||||||| | ||||||||| || ||||||| || || |
Sbjct 9523 GTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTT 9464
Query 138526 TTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGC 138585
|| | || ||||||| |||||||| ||||||||||| || |||||||||| ||||| |
Sbjct 9463 TTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCAC 9404
Query 138586 AAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTC 138645
|||||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| |
Sbjct 9403 AAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 9344
Query 138646 CCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAG 138705
| || | ||| | |||| ||| | |||| | | || || ||| | |||||||| |
Sbjct 9343 CGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTG 9284
Query 138706 CGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCT 138765
| ||||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 9283 CCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCT 9224
Query 138766 ACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAAC 138825
| || || || |||||| | || |||||| | ||||| |||||||| || ||||| |
Sbjct 9223 ATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGC 9164
Query 138826 CTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877
|||| |||||| || | || ||||| || || | ||| | || ||||||||
Sbjct 9163 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 9112
>seq11714
Length=14353
Score = 587 bits (650), Expect = 1e-162
Identities = 707/957 (74%), Gaps = 6/957 (1%)
Strand=Plus/Minus
Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433
||||| | ||| | |||||||| || || || || || | || |||||||| ||
Sbjct 1429 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1370
Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492
||||| ||||| ||| | | | || || | |||||| | || ||||| ||||| ||
Sbjct 1369 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1311
Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552
||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| ||
Sbjct 1310 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1251
Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610
|| || || ||||| |||| ||| || ||| || || || | || || || ||
Sbjct 1250 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCA 1193
Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670
|||||||||||||| || ||||||| |||||||| || || ||||||||| ||||| |
Sbjct 1192 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 1133
Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730
|| | ||||| | | ||||| | ||| |||||||| ||||||||||| || |
Sbjct 1132 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1073
Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790
|| ||||||||||| ||||||||| ||| || || ||||| |||||||| ||||| |||
Sbjct 1072 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 1013
Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850
||||||||| || ||||||| |||| ||||| ||| |||||||||||| || ||
Sbjct 1012 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 953
Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910
|| ||||| ||||| |||| ||| |||| |||||||| || ||||||||||| |||||
Sbjct 952 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 893
Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970
|| || |||||||| || || || || || ||||| || || || || ||||||||||
Sbjct 892 CCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 833
Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030
|| || | || || |||||| | | | || || || || ||||| || |
Sbjct 832 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 773
Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090
||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct 772 GGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTT 713
Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150
|| || ||||||| |||||||| |||||||| |||||||| |||| || ||| |
Sbjct 712 GGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 653
Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210
|| |||||||| || || ||||| |||||| |||| | || | || ||||| |||
Sbjct 652 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTC 593
Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270
||||| ||||| ||||| |||||||| || | || | | |||| || || | ||
Sbjct 592 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAAT 533
Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327
|| ||||| ||| | | || |||||| || |||||||| || ||||| || |||
Sbjct 532 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627742127760000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |