Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq11714 504 1e-137 >seq11714 Length=14353 Score = 504 bits (558), Expect = 1e-137 Identities = 682/945 (72%), Gaps = 4/945 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 1389 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATT 1331 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 1330 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 1271 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || || ||||| || |||| |||| || || Sbjct 1270 TCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 1211 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| || || || || ||||||||||| ||| | ||||||| ||||| ||||| || Sbjct 1210 GGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 1151 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | ||||| | | || | | || ||||| | Sbjct 1150 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1091 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 1090 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1031 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| || ||||| ||| | | |||||| | ||||| || || || Sbjct 1030 CCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 971 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 970 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 911 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||| |||||||||||||| || ||| ||| || || ||| | ||||| || | Sbjct 910 CACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCC 851 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 |||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 850 CTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 791 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||||||||||||||| || |||||||| || Sbjct 790 AATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTA 731 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| ||||| || || || || | ||||| || ||||| |||||||| | Sbjct 730 GCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGT 671 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||| | || | ||||| || | || | ||||| || || | ||| Sbjct 670 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 611 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || |||| ||||| |||||||||||||| ||||| |||||||||||||| |||||| Sbjct 610 ATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG- 552 Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 ||| | | | ||| || |||||||| |||| || ||||| | || |||||||||||||| Sbjct 551 TCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 492 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 491 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807264732489000