Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 223 4e-53
>seq18099
Length=159039
Score = 223 bits (246), Expect = 4e-53
Identities = 602/910 (66%), Gaps = 12/910 (1%)
Strand=Plus/Minus
Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071
||| || || ||||| || | || || ||||||||||| || |||| || |||
Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885
Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131
||||| ||||||||||||| | ||| ||| | ||| | | || | || |
Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825
Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191
||| |||||||| || || || ||||| |||||| ||||| |||||| || | |
Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765
Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251
| ||||| || || | ||| ||| ||||| |||||||| | |||
Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705
Query 33252 AGATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGC 33308
|| | || |||| ||||| | | | | || | | || |||| ||||||| ||
Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAGC 20648
Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368
|||||| ||||| ||||| |||||||| |||| ||||| || || || | || ||
Sbjct 20647 GAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGG 20588
Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428
||| || ||||| || |||||||| || || ||| ||| || ||||| ||||| || ||
Sbjct 20587 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 20528
Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTATCCACT 33487
||| || ||| || || | | | || | | | | | ||| |||||
Sbjct 20527 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-CATCGATCCAAG 20469
Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547
| |||||| | || ||||| | |||||||| |||||||| || ||| || | ||
Sbjct 20468 TCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAAT 20409
Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607
| | |||| || ||||||| | || || |||| | |||| |||||| || ||||
Sbjct 20408 GATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAAT 20349
Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667
| || || ||||| || || || ||||||||||| | || |||| | ||||| |
Sbjct 20348 GGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACAT 20289
Query 33668 CTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726
||| ||| |||||| || | ||||| || ||||||||| || || || ||
Sbjct 20288 CTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAA 20230
Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGAT 33785
|| | ||| ||||| || || | ||| || | ||| || || | ||| ||| | |
Sbjct 20229 GCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTT 20171
Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845
|||| || | ||| |||||||| | ||||| || ||||| || || || || |||||
Sbjct 20170 GTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACAT 20111
Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 33905
| |||||| | || || || || || ||| ||||| | ||| |||| | |||
Sbjct 20110 TTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGGTGTTGGGGTAAG 20051
Query 33906 GATGGGTTCC 33915
|| || |||
Sbjct 20050 GAGAGGCTCC 20041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622723133679000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |