Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq18099 223 4e-53 >seq18099 Length=159039 Score = 223 bits (246), Expect = 4e-53 Identities = 602/910 (66%), Gaps = 12/910 (1%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || ||||| || | || || ||||||||||| || |||| || ||| Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| ||||||||||||| | ||| ||| | ||| | | || | || | Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||| |||||||| || || || ||||| |||||| ||||| |||||| || | | Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | ||||| || || | ||| ||| ||||| |||||||| | ||| Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705 Query 33252 AGATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGC 33308 || | || |||| ||||| | | | | || | | || |||| ||||||| || Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAGC 20648 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 |||||| ||||| ||||| |||||||| |||| ||||| || || || | || || Sbjct 20647 GAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGG 20588 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||| || ||||| || |||||||| || || ||| ||| || ||||| ||||| || || Sbjct 20587 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 20528 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTATCCACT 33487 ||| || ||| || || | | | || | | | | | ||| ||||| Sbjct 20527 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-CATCGATCCAAG 20469 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 | |||||| | || ||||| | |||||||| |||||||| || ||| || | || Sbjct 20468 TCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAAT 20409 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 | | |||| || ||||||| | || || |||| | |||| |||||| || |||| Sbjct 20408 GATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAAT 20349 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | || || ||||| || || || ||||||||||| | || |||| | ||||| | Sbjct 20348 GGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACAT 20289 Query 33668 CTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 ||| ||| |||||| || | ||||| || ||||||||| || || || || Sbjct 20288 CTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAA 20230 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGAT 33785 || | ||| ||||| || || | ||| || | ||| || || | ||| ||| | | Sbjct 20229 GCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTT 20171 Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 |||| || | ||| |||||||| | ||||| || ||||| || || || || ||||| Sbjct 20170 GTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACAT 20111 Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 33905 | |||||| | || || || || || ||| ||||| | ||| |||| | ||| Sbjct 20110 TTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGGTGTTGGGGTAAG 20051 Query 33906 GATGGGTTCC 33915 || || ||| Sbjct 20050 GAGAGGCTCC 20041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622723133679000