Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq28288 104 2e-17
seq27144 100 3e-16
seq2313 100 3e-16
seq8442 98.7 1e-15
seq5576 93.3 4e-14
seq18065 87.8 2e-12
seq14351 84.2 2e-11
>seq28288
Length=9629
Score = 104 bits (114), Expect = 2e-17
Identities = 156/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAA-TCA 26825
||||| | ||||| ||||| | ||||| ||| | || ||| | ||| | |||| |||
Sbjct 4619 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAACTCA 4678
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||||| || || | ||||| |||||| ||||| |||||||| ||||| ||
Sbjct 4679 ---GACACTATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGAC 4735
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944
|| || |||||||| | || || ||||||||||| |||| | | || | ||| |||||
Sbjct 4736 CAGCAGAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGTCG-GACATTAGCGGACTA 4794
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||||||| ||||| || ||| | || || || ||
Sbjct 4795 CAACATTCAGAAAGAGTCAACTCTTCACCTTGTTCT 4830
>seq27144
Length=112545
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || ||||||| |||| | ||||||
Sbjct 90501 AAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATCACTCTCGAGGTTGAATCA 90442
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||||||||||| | ||||| ||||| ||||| ||||| || || || |||
Sbjct 90441 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGAT 90382
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|||||| || | || | || ||| |||||||||||||| | | | || |||||
Sbjct 90381 CAACAACGATTAATCTTCGCCGGAAAACAACTCGAAGACGGACGTACTCTCGCTGACTAC 90322
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || ||||| || | || || |||||
Sbjct 90321 AACATCCAGAAGGAATCAACACTTCACCTTGTCCT 90287
>seq2313
Length=70781
Score = 100 bits (110), Expect = 3e-16
Identities = 106/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
||||||||||| ||||| || |||||||| || || |||| | || || ||||| |||
Sbjct 4826 GACAAAGAAGGTATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAACTTGAA 4767
Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||| | | ||| | ||| || || ||||| || ||||| |||||| | ||||| ||| |
Sbjct 4766 GATGGTCG-AACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 4708
Query 26981 GAGACTTAGAGGAGGAA 26997
||| || ||||| ||||
Sbjct 4707 GAGGCTCAGAGGTGGAA 4691
>seq8442
Length=60656
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826
||||||| | |||| |||||| | ||||| ||| | || ||| | ||| | || | |
Sbjct 44032 AATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 43973
Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886
| |||||||| || | ||||| ||||| || || |||||||| ||||| ||
Sbjct 43972 A-GACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACG 43914
Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946
|||| || ||||| | || || ||||||||||| || | | ||| | | | || || |
Sbjct 43913 AACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCTTGGAGATTACA 43854
Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
| ||||| || ||||| ||| | ||| |||| || | | ||||| ||||
Sbjct 43853 ATATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGGAA 43803
>seq5576
Length=16168
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827
|||||| | ||||| ||||| |||||||| ||| | || ||| | ||| | || | | |
Sbjct 1025 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAAACCATTACCTTAGAAGTTGAGAGCTCA 966
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
||||||||||| | ||||| |||||| ||||| |||||||| |||| || ||
Sbjct 965 -GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGGATCACTCCGGACCA 907
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925
||| ||||| || | || || ||||| ||||| ||||
Sbjct 906 ACAGAGACTGATCTTCGCTGGTAAACAGCTCGAGGATG 869
>seq18065
Length=21122
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 26854 AGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAAC 26913
||||| || ||||||||||| ||||| || || || ||||| || | | ||| ||||
Sbjct 12492 AGATTCAAGATAAAGAAGGGATCCCTCCGGACCAGCAGAGACTTATCTTTGCCGGTAAAC 12551
Query 26914 AACTCGAAGATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCAT 26972
| ||||| |||| | | || | ||| || |||||||||| ||||||||| || | |||
Sbjct 12552 AGCTCGAGGATGGTCG-GACTTTAGCGGATTATAACATTCTAAAAGAATCAACCCTTCAT 12610
Query 26973 CTGGTCCTGAGACTTAGAGGAGGAA 26997
|||| || | || ||||| ||||
Sbjct 12611 TTGGTGCTTCGTCTGAGAGGTGGAA 12635
>seq14351
Length=15190
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/211 (71%), Gaps = 6/211 (3%)
Strand=Plus/Plus
Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAACGACACCAT 26836
||||| || ||| | || || ||| | || ||| | ||| | || | | | ||||||||
Sbjct 4401 TTTGTCAAGACACTCACGGGTAAAACCATTACCCTAGAAGTCGAGAGCTCA-GACACCAT 4459
Query 26837 CGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACT 26896
|| | || ||| || ||| ||||| |||||||| ||||| || ||||| || ||
Sbjct 4460 TGACAATGTTAAAGCTAA-ATTCAAGACAAGGAAGGGATCCCTCCGGACCAACAGAGGCT 4518
Query 26897 CAT-TTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAA 26955
||| || | | | |||||||| || |||| | ||| | || ||||||||||| |
Sbjct 4519 CATCTTTCTG--GAAAACAACTTGAGGATGGTCGAACTCTTGCTGATTATAACATTCAGA 4576
Query 26956 AAGAATCTACTATCCATCTGGTCCTGAGACT 26986
| ||||| ||| | || || || ||||||||
Sbjct 4577 AGGAATCAACTCTTCACCTTGTGCTGAGACT 4607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478490231118000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |