Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq28288 104 2e-17 seq27144 100 3e-16 seq2313 100 3e-16 seq8442 98.7 1e-15 seq5576 93.3 4e-14 seq18065 87.8 2e-12 seq14351 84.2 2e-11 >seq28288 Length=9629 Score = 104 bits (114), Expect = 2e-17 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAA-TCA 26825 ||||| | ||||| ||||| | ||||| ||| | || ||| | ||| | |||| ||| Sbjct 4619 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAACTCA 4678 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| || || | ||||| |||||| ||||| |||||||| ||||| || Sbjct 4679 ---GACACTATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGAC 4735 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 || || |||||||| | || || ||||||||||| |||| | | || | ||| ||||| Sbjct 4736 CAGCAGAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGTCG-GACATTAGCGGACTA 4794 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| ||||| || ||| | || || || || Sbjct 4795 CAACATTCAGAAAGAGTCAACTCTTCACCTTGTTCT 4830 >seq27144 Length=112545 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || ||||||| |||| | |||||| Sbjct 90501 AAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATCACTCTCGAGGTTGAATCA 90442 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||| Sbjct 90441 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGAT 90382 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| || | || | || ||| |||||||||||||| | | | || ||||| Sbjct 90381 CAACAACGATTAATCTTCGCCGGAAAACAACTCGAAGACGGACGTACTCTCGCTGACTAC 90322 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || | || || ||||| Sbjct 90321 AACATCCAGAAGGAATCAACACTTCACCTTGTCCT 90287 >seq2313 Length=70781 Score = 100 bits (110), Expect = 3e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || |||||||| || || |||| | || || ||||| ||| Sbjct 4826 GACAAAGAAGGTATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAACTTGAA 4767 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | | ||| | ||| || || ||||| || ||||| |||||| | ||||| ||| | Sbjct 4766 GATGGTCG-AACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 4708 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || ||||| |||| Sbjct 4707 GAGGCTCAGAGGTGGAA 4691 >seq8442 Length=60656 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826 ||||||| | |||| |||||| | ||||| ||| | || ||| | ||| | || | | Sbjct 44032 AATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 43973 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | |||||||| || | ||||| ||||| || || |||||||| ||||| || Sbjct 43972 A-GACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACG 43914 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 |||| || ||||| | || || ||||||||||| || | | ||| | | | || || | Sbjct 43913 AACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCTTGGAGATTACA 43854 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | ||||| || ||||| ||| | ||| |||| || | | ||||| |||| Sbjct 43853 ATATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGGAA 43803 >seq5576 Length=16168 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 |||||| | ||||| ||||| |||||||| ||| | || ||| | ||| | || | | | Sbjct 1025 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAAACCATTACCTTAGAAGTTGAGAGCTCA 966 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | ||||| |||||| ||||| |||||||| |||| || || Sbjct 965 -GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGGATCACTCCGGACCA 907 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 ||| ||||| || | || || ||||| ||||| |||| Sbjct 906 ACAGAGACTGATCTTCGCTGGTAAACAGCTCGAGGATG 869 >seq18065 Length=21122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 26854 AGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAAC 26913 ||||| || ||||||||||| ||||| || || || ||||| || | | ||| |||| Sbjct 12492 AGATTCAAGATAAAGAAGGGATCCCTCCGGACCAGCAGAGACTTATCTTTGCCGGTAAAC 12551 Query 26914 AACTCGAAGATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCAT 26972 | ||||| |||| | | || | ||| || |||||||||| ||||||||| || | ||| Sbjct 12552 AGCTCGAGGATGGTCG-GACTTTAGCGGATTATAACATTCTAAAAGAATCAACCCTTCAT 12610 Query 26973 CTGGTCCTGAGACTTAGAGGAGGAA 26997 |||| || | || ||||| |||| Sbjct 12611 TTGGTGCTTCGTCTGAGAGGTGGAA 12635 >seq14351 Length=15190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/211 (71%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAACGACACCAT 26836 ||||| || ||| | || || ||| | || ||| | ||| | || | | | |||||||| Sbjct 4401 TTTGTCAAGACACTCACGGGTAAAACCATTACCCTAGAAGTCGAGAGCTCA-GACACCAT 4459 Query 26837 CGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACT 26896 || | || ||| || ||| ||||| |||||||| ||||| || ||||| || || Sbjct 4460 TGACAATGTTAAAGCTAA-ATTCAAGACAAGGAAGGGATCCCTCCGGACCAACAGAGGCT 4518 Query 26897 CAT-TTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAA 26955 ||| || | | | |||||||| || |||| | ||| | || ||||||||||| | Sbjct 4519 CATCTTTCTG--GAAAACAACTTGAGGATGGTCGAACTCTTGCTGATTATAACATTCAGA 4576 Query 26956 AAGAATCTACTATCCATCTGGTCCTGAGACT 26986 | ||||| ||| | || || || |||||||| Sbjct 4577 AGGAATCAACTCTTCACCTTGTGCTGAGACT 4607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478490231118000