Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq13163 131 4e-25 seq21777 107 5e-18 seq2366 98.7 3e-15 >seq13163 Length=108863 Score = 131 bits (144), Expect = 4e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||| ||||| || ||| ||| || Sbjct 36589 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTCTATGTTGCAGAAGGGGAGCTCTC 36647 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 36648 ATGTCAAATGTATCAGCGTTCAGCGGATATGGGTCTTGGTGTGCCGTTTAACATTGCTTC 36707 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| || ||||||| | |||| || ||||| || | Sbjct 36708 CTACTCTCTTCTTACTTGCATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTAC 36767 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 || |||| || ||||| ||||| |||| ||| || Sbjct 36768 CCATCTTATTGGGGATGCTCATGTGTACAAAAATCA 36803 >seq21777 Length=19835 Score = 107 bits (118), Expect = 5e-18 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||||||||| || | ||| ||||| || | |||||| |||| | Sbjct 4245 ATGAAAGATGACAGCATCGAGGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGC 4186 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||| || || |||||||| || | || ||| | |||||| | | | |||||||| Sbjct 4185 AAATCTGCTGGTGGGATTGGTGTTTCAGTTCATAATATCCGTGCAACTGGA-AGTTACAT 4127 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || | |||| Sbjct 4126 TCGAGGCACAAATGGAACGTCAAATGGTATCGTTCCTATGCTGCGTGTATTCAATGATAC 4067 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || ||||| || ||||| ||| | |||||| Sbjct 4066 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 4028 >seq2366 Length=14026 Score = 98.7 bits (108), Expect = 3e-15 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665 || |||||||| || | ||| || ||||| ||| || ||||| || || | Sbjct 9772 ATCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTCCTGATCTT 9713 Query 111666 GAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGAT 111724 || ||||| ||||| ||||| || ||| | | | ||||||||||| ||| ||| Sbjct 9712 AAACTGATGGCCCTTCCTCCATGCCA-CTTGTTTTCACAGTTTTATGTTG-CGAATGGAG 9655 Query 111725 G-CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 |||||||| |||||||||||||| || || ||||| ||||| ||||| || ||||| | Sbjct 9654 AACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCATTTAACA 9595 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||| ||| | || ||||| ||| | ||||||| Sbjct 9594 TTGCCTCATACTCTCTTCTTACGTGCATTCTCGCTCA 9558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302873080002050