Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq5576 114 1e-20
seq18065 100 2e-16
seq2313 98.7 9e-16
seq14351 82.4 7e-11
>seq5576
Length=16168
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| |||||||| ||| | |||||| | ||||| ||| |
Sbjct 1025 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAAACCATTACCTTAGAAGTTGAGAGCTCA 966
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| |||||| ||||| ||||| || |||| || |||
Sbjct 965 GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGGATCACTCCGGACCAA 906
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||||||||| | || || || || ||||| |||| | | | ||||| ||
Sbjct 905 CAGAGACTGATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTTGCGGATTACAAT 846
Query 24171 ATTCAAAAAGAATCTACAATTCA 24193
|| ||||| || |||||| ||||
Sbjct 845 ATCCAAAAGGAGTCTACACTTCA 823
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| || || || ||| | ||||| | || || ||| |
Sbjct 797 ATGCAAATCTTTGTCAAAACTTTGACAGGGAAAACCATTACTCTTGAGGTAGAGAGCTCT 738
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || || || | || || |||||| ||||||||||| || || || || |||
Sbjct 737 GATACGATTGATAACGTGAAGGCAAAGATACAAGACAAAGAAGGGATTCCACCGGACCAA 678
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||||| || || | | ||| ||||| || ||||||| | || | ||| ||||| ||
Sbjct 677 CAGAGGCTAATCTTTGCCGGGAAGCAGCTAGAAGATGGTCG-GACTTTAGCTGATTACAA 619
Query 24170 CATTCAAAAAGAATCTACAATTCA 24193
||||| ||||| || ||| ||||
Sbjct 618 TATTCAGAAAGAGTCAACACTTCA 595
>seq18065
Length=21122
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | || || ||| | |||||| | ||||| ||| |
Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||| || | || || ||||| || |||||||| || ||||| || ||
Sbjct 12467 TACACCATTGACAATGTTAAGGCGGAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 12526
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169
|||||||| || | | ||| || || ||||| |||| | | | | |||| |||||||
Sbjct 12527 CAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGA-CTTTAGCGGATTATAA 12585
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
||||| ||||||||| || ||||||| ||| | | ||||||| |||
Sbjct 12586 CATTCTAAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGGA 12634
>seq2313
Length=70781
Score = 98.7 bits (108), Expect = 9e-16
Identities = 105/136 (77%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
||||||||||| ||||| || ||||||||||| ||||||| | || |||||||| |||
Sbjct 4826 GACAAAGAAGGTATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAACTTGAA 4767
Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||| | ||| | ||| ||||| ||||| || ||||| ||||| ||||| | || ||
Sbjct 4766 GATGGTCG-AACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 4708
Query 24203 AAGATTGAGAGGAGGA 24218
|| | ||||| |||
Sbjct 4707 GAGGCTCAGAGGTGGA 4692
>seq14351
Length=15190
Score = 82.4 bits (90), Expect = 7e-11
Identities = 145/208 (70%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059
||||| || ||| | || || ||| | |||||| | ||||||||| | ||||||||
Sbjct 4401 TTTGTCAAGACACTCACGGGTAAAACCATTACCCTAGAAGTCGAGAGCTCAGACACCATT 4460
Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119
|| | || ||| || ||| ||||| ||||| || ||||| || |||||||| ||
Sbjct 4461 GACAATGTTAAAGCTAA-ATTCAAGACAAGGAAGGGATCCCTCCGGACCAACAGAGGCTC 4519
Query 24120 AT-TTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178
|| || | | | || ||||| || |||| ||| | |||||||||||||| ||
Sbjct 4520 ATCTTTCTG--GAAAACAACTTGAGGATGGTCGAACTCTTGCTGATTATAACATTCAGAA 4577
Query 24179 AGAATCTACAATTCATTTAGTGTTAAGA 24206
||||| || |||| | ||| | |||
Sbjct 4578 GGAATCAACTCTTCACCTTGTGCTGAGA 4605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429785223460125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |