Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5576 114 1e-20 seq18065 100 2e-16 seq2313 98.7 9e-16 seq14351 82.4 7e-11 >seq5576 Length=16168 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| |||||||| ||| | |||||| | ||||| ||| | Sbjct 1025 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAAACCATTACCTTAGAAGTTGAGAGCTCA 966 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| ||||| || |||| || ||| Sbjct 965 GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGGATCACTCCGGACCAA 906 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | || || || || ||||| |||| | | | ||||| || Sbjct 905 CAGAGACTGATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTTGCGGATTACAAT 846 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| || |||||| |||| Sbjct 845 ATCCAAAAGGAGTCTACACTTCA 823 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || || || ||| | ||||| | || || ||| | Sbjct 797 ATGCAAATCTTTGTCAAAACTTTGACAGGGAAAACCATTACTCTTGAGGTAGAGAGCTCT 738 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || |||||| ||||||||||| || || || || ||| Sbjct 737 GATACGATTGATAACGTGAAGGCAAAGATACAAGACAAAGAAGGGATTCCACCGGACCAA 678 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | ||| ||||| || ||||||| | || | ||| ||||| || Sbjct 677 CAGAGGCTAATCTTTGCCGGGAAGCAGCTAGAAGATGGTCG-GACTTTAGCTGATTACAA 619 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||||| ||||| || ||| |||| Sbjct 618 TATTCAGAAAGAGTCAACACTTCA 595 >seq18065 Length=21122 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || ||| | |||||| | ||||| ||| | Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||| || | || || ||||| || |||||||| || ||||| || || Sbjct 12467 TACACCATTGACAATGTTAAGGCGGAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 12526 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 |||||||| || | | ||| || || ||||| |||| | | | | |||| ||||||| Sbjct 12527 CAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGA-CTTTAGCGGATTATAA 12585 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||||||||| || ||||||| ||| | | ||||||| ||| Sbjct 12586 CATTCTAAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGGA 12634 >seq2313 Length=70781 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| ||||| || ||||||||||| ||||||| | || |||||||| ||| Sbjct 4826 GACAAAGAAGGTATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAACTTGAA 4767 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | ||| | ||| ||||| ||||| || ||||| ||||| ||||| | || || Sbjct 4766 GATGGTCG-AACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 4708 Query 24203 AAGATTGAGAGGAGGA 24218 || | ||||| ||| Sbjct 4707 GAGGCTCAGAGGTGGA 4692 >seq14351 Length=15190 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| || ||| | || || ||| | |||||| | ||||||||| | |||||||| Sbjct 4401 TTTGTCAAGACACTCACGGGTAAAACCATTACCCTAGAAGTCGAGAGCTCAGACACCATT 4460 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | || ||| || ||| ||||| ||||| || ||||| || |||||||| || Sbjct 4461 GACAATGTTAAAGCTAA-ATTCAAGACAAGGAAGGGATCCCTCCGGACCAACAGAGGCTC 4519 Query 24120 AT-TTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178 || || | | | || ||||| || |||| ||| | |||||||||||||| || Sbjct 4520 ATCTTTCTG--GAAAACAACTTGAGGATGGTCGAACTCTTGCTGATTATAACATTCAGAA 4577 Query 24179 AGAATCTACAATTCATTTAGTGTTAAGA 24206 ||||| || |||| | ||| | ||| Sbjct 4578 GGAATCAACTCTTCACCTTGTGCTGAGA 4605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429785223460125