Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_007581.1 Length=185683 Score E Sequences producing significant alignments: (Bits) Value seq7810 179 4e-40 seq20250 167 3e-36 seq4902 82.4 9e-11 >seq7810 Length=38048 Score = 179 bits (198), Expect = 4e-40 Identities = 269/379 (71%), Gaps = 6/379 (2%) Strand=Plus/Minus Query 39043 GATTAAAAGTGGCTAAATTACATGAGAAAATAACTAATCAAAGAAAAAATTTTTTGCATA 39102 || ||||||| |||| | | ||||| | ||| | ||| |||||| ||| || | | Sbjct 14456 GAGTAAAAGTAGCTAGAATTCATGAATACATATCAAATGCTAGAAAAGATTACTTAGACA 14397 Query 39103 AGTTATCAATTAAACTAATAAGAGAAAACCA--ATCT-ATAGTTATTGAGGACTTAAAAG 39159 | | |||| | || | || | ||| ||| || | || | ||| ||||| || ||| Sbjct 14396 AAATCTCAACTGAAATCATCA---AAAGCCACGATGTTATCGGTATAGAGGATTTGCAAG 14340 Query 39160 TAAAAAATATGTTACAAAATCATAAGTTAGCAAAAGCAATAAGTGAAGTGTCATGGTATG 39219 || ||||||||| | ||||||||||||||||||||||| |||||||| || |||| Sbjct 14339 TATCGAATATGTTAAAGAATCATAAGTTAGCAAAAGCAATTAGTGAAGTATCTTGGTCAC 14280 Query 39220 AATTTAGAACAATGCTAGAATATAAAGCTGACTGGTATGGTAGAGAATTAATAATTGCAC 39279 | ||| |||| ||| | ||||||||||| | |||||||| | | || | || | | | Sbjct 14279 AGTTTCGAACCATGTTGGAATATAAAGCAAAATGGTATGGCAAACAAGTCATTGTCGTAT 14220 Query 39280 CATCAAATTATGCAAGTAGTCAAATATGTTCTAATTGTGGTTACAAAAATAAAGAAGTAA 39339 | || | ||| || ||| |||||||| |||||| || |||||||||| || | Sbjct 14219 CGAAAACATTTGCTTCCAGCCAATTATGTTCTTGTTGTGGATATCAAAATAAAGACGTTA 14160 Query 39340 AAAACTTAGAACTTAGAGAATGGGTATGTCCTAAATGTGGAATACATCATGATAGAGATA 39399 |||| || | || | ||||||| |||||| ||| | | ||| |||||||| |||| Sbjct 14159 AAAATCTAAACCTACGTGAATGGGACTGTCCTTCTTGTCGTACACACCATGATAGGGATA 14100 Query 39400 TAAATGCAAGTAAAAATCT 39418 | || ||||||| ||||| Sbjct 14099 TTAACGCAAGTATCAATCT 14081 >seq20250 Length=26292 Score = 167 bits (184), Expect = 3e-36 Identities = 266/379 (70%), Gaps = 6/379 (2%) Strand=Plus/Minus Query 39043 GATTAAAAGTGGCTAAATTACATGAGAAAATAACTAATCAAAGAAAAAATTTTTTGCATA 39102 || |||| || |||| | | ||||| | ||| | ||| |||||| ||| ||| | | Sbjct 6660 GAGTAAAGGTAGCTAGAATTCATGAATACATATCAAATACTAGAAAAGATTACTTGGACA 6601 Query 39103 AGTTATCAATTAAACTAATAAGAGAAAACCA--ATCT-ATAGTTATTGAGGACTTAAAAG 39159 | | |||| | || | || | ||||||| || | || | ||| ||||| || ||| Sbjct 6600 AAATTTCAACTGAAATCATCA---AAAACCACGATGTTATCGGTATAGAGGATTTGCAAG 6544 Query 39160 TAAAAAATATGTTACAAAATCATAAGTTAGCAAAAGCAATAAGTGAAGTGTCATGGTATG 39219 || ||||||||| | ||| ||||||||||||||||||| ||||| || || |||| Sbjct 6543 TATCGAATATGTTAAAGAATTATAAGTTAGCAAAAGCAATTAGTGAGGTATCTTGGTTGC 6484 Query 39220 AATTTAGAACAATGCTAGAATATAAAGCTGACTGGTATGGTAGAGAATTAATAATTGCAC 39279 ||||| || | ||| ||||||| ||||| | |||||||| | | || | || | | | Sbjct 6483 AATTTCGATCCATGTTAGAATACAAAGCAAAATGGTATGGCAAACAAGTCATTGTCGTAT 6424 Query 39280 CATCAAATTATGCAAGTAGTCAAATATGTTCTAATTGTGGTTACAAAAATAAAGAAGTAA 39339 | || | ||| || ||| |||||||| ||||| || |||||||||| || | Sbjct 6423 CGAAAACATTTGCTTCCAGCCAATTATGTTCTTGCTGTGGATATCAAAATAAAGACGTTA 6364 Query 39340 AAAACTTAGAACTTAGAGAATGGGTATGTCCTAAATGTGGAATACATCATGATAGAGATA 39399 |||| || | || | ||||||| |||||| ||| | | ||| |||||||| |||| Sbjct 6363 AAAATCTAAACCTACGTGAATGGGACTGTCCTTCTTGTCGTACACACCATGATAGGGATA 6304 Query 39400 TAAATGCAAGTAAAAATCT 39418 | || ||||| | ||||| Sbjct 6303 TTAACGCAAGCATCAATCT 6285 >seq4902 Length=31017 Score = 82.4 bits (90), Expect = 9e-11 Identities = 160/235 (68%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 39167 TATGTTACAAAATCATAAGTTAGCAAAAGCAATAAGTGAAGTGTCATGGTATGAATTTAG 39226 |||| | ||||| ||| | | |||||| || ||||| |||| ||| ||||| Sbjct 27123 TATGCTCAAAAATAGAAAGCTTGTAAAAGCGATTAGTGACATGTCTTGGCCACAATTTTA 27182 Query 39227 AACAATGCTAGAATATAAAGCTGACTGGTATGGTAGAGAATTAATAATTGCACCATCAAA 39286 ||||||| | ||||||||| | |||||| ||| | ||| | | || | ||| || Sbjct 27183 AACAATGTTGAAATATAAAGTAAAGTGGTATAGTAAACAATGAGT---TGTAATATCTAA 27239 Query 39287 T---TATGCAAGTAGTCAAATATGTTCTAATTGTGGTTACAAAAATAAAGAAGTAAAAAA 39343 | ||| ||||||| ||||||| ||||| || ||||| | ||| | ||||| Sbjct 27240 AACATTTGCTTCTAGTCAATTATGTTCCAATTGCAACTATAAAAACATAGATGCTAAAAA 27299 Query 39344 CTTAGAACTTAGAGAATGGGTATGTCCTAAATGTGGAATACATCATGATAGAGAT 39398 || | || | || | || | |||| | ||||| | |||||||||||||||| Sbjct 27300 TCTAAACATTCGTGAGTAGGATTATCCTTATTGTGGCACACATCATGATAGAGAT 27354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593843924907000