Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq18065 93.3 4e-14
seq24711 82.4 6e-11
>seq18065
Length=21122
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || |||||||| ||||| || || |||||||||||| | ||| ||| |
Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|||| ||| |||| || || | ||| ||||||||||| |||| || ||
Sbjct 12467 TACACCATTG-ACAATGTTAAGGCGGAGATTCAAGATAAAGAAGGGATCCCTCCGGACCA 12525
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| |||||||| | ||| || ||||| | || |||| || | || ||||||||
Sbjct 12526 GCAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGACTTTAGCGGATTATAA 12585
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514
||||| |||||| || || | ||| ||||| | | || |||| ||||
Sbjct 12586 CATTCTAAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGGAA 12635
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || |||||||| |||| ||||| |||||||||||| | ||| |||
Sbjct 14880 ATGCAGATATTTGTCAAGCCGCTTACGGGTAAAACCATTACCCTAGAAGTTGAGAGGTCA 14939
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|| || ||| |||| || ||| || ||| ||||||||||| |||| || ||
Sbjct 14940 GATACCATTG-ACAATGTTAAAGCGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCA 14998
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| ||| | || | ||| || |||||| | || |||| |||| | || ||||| ||
Sbjct 14999 GCAGAGATTAATCTTTGCCGGTAAACAACTTGAGGATGGTCGAACCTTTGCGGATTACAA 15058
Query 115465 CATTCAAAAAGAGTCTACT 115483
|| ||||| ||||| |||
Sbjct 15059 CACCCAAAAGGAGTCAACT 15077
>seq24711
Length=27656
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || ||||| || || | ||||| || || ||||| | ||| || | |
Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|||||| ||| |||| || || || ||| || ||||| || | || || ||
Sbjct 4712 GACACTATTG-ACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCA 4770
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| ||| | || | ||| || || || | ||||| | || ||| |||| ||||| ||
Sbjct 4771 GCAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAA 4830
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498
||| || |||||||||||| | ||| ||||||||
Sbjct 4831 CATCCAGAAAGAGTCTACTCTTCATTTGGTGTTG 4864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425194833853000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |