Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq18065 93.3 4e-14 seq24711 82.4 6e-11 >seq18065 Length=21122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| ||||| || || |||||||||||| | ||| ||| | Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||| ||| |||| || || | ||| ||||||||||| |||| || || Sbjct 12467 TACACCATTG-ACAATGTTAAGGCGGAGATTCAAGATAAAGAAGGGATCCCTCCGGACCA 12525 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| || ||||| | || |||| || | || |||||||| Sbjct 12526 GCAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGACTTTAGCGGATTATAA 12585 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| |||||| || || | ||| ||||| | | || |||| |||| Sbjct 12586 CATTCTAAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGGAA 12635 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| |||| ||||| |||||||||||| | ||| ||| Sbjct 14880 ATGCAGATATTTGTCAAGCCGCTTACGGGTAAAACCATTACCCTAGAAGTTGAGAGGTCA 14939 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || ||| || ||| ||||||||||| |||| || || Sbjct 14940 GATACCATTG-ACAATGTTAAAGCGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCA 14998 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | ||| || |||||| | || |||| |||| | || ||||| || Sbjct 14999 GCAGAGATTAATCTTTGCCGGTAAACAACTTGAGGATGGTCGAACCTTTGCGGATTACAA 15058 Query 115465 CATTCAAAAAGAGTCTACT 115483 || ||||| ||||| ||| Sbjct 15059 CACCCAAAAGGAGTCAACT 15077 >seq24711 Length=27656 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || | ||||| || || ||||| | ||| || | | Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || || ||| || ||||| || | || || || Sbjct 4712 GACACTATTG-ACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCA 4770 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | ||| || || || | ||||| | || ||| |||| ||||| || Sbjct 4771 GCAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAA 4830 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| || |||||||||||| | ||| |||||||| Sbjct 4831 CATCCAGAAAGAGTCTACTCTTCATTTGGTGTTG 4864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425194833853000