Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq18099 215 7e-51 seq28467 109 7e-19 >seq18099 Length=159039 Score = 215 bits (238), Expect = 7e-51 Identities = 588/887 (66%), Gaps = 10/887 (1%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || ||||| || | || || ||||||||||| || |||| ||| ||| Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| |||| || ||||| | ||| ||| | ||| | | || | || | Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||| ||||| || ||||| || ||||| |||||| ||||| |||||| || | | Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | ||||| || || | ||| ||| ||||| ||||| || | ||| Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705 Query 32609 AGATCTTACTGTTTCTTCACTCGG-TGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 || | ||| |||| ||||| | | ||| ||| | || | |||||||| |||| Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACG-TAACAGAGTATAAATCAAACAAGCGA 20646 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 |||| ||||| ||||| |||||||| ||||| ||||| || || || | || |||| Sbjct 20645 AATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGCA 20586 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787 | || ||||| || |||||||| || || || || || ||||| ||||| || |||| Sbjct 20585 TGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTT 20526 Query 32788 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTATCCACTTT 32846 | || || || || | | | || | | | | | ||| ||||| | Sbjct 20525 CAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-CATCGATCCAAGTC 20467 Query 32847 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 32906 |||||| | || ||||| | |||||||| || || || || ||| || | || Sbjct 20466 ATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAATGA 20407 Query 32907 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 32966 | | |||| || ||||||| | ||||| || | | |||| |||||| || ||||| Sbjct 20406 TCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAATGG 20347 Query 32967 ATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTGTACTTC 33025 || || ||||| || ||||| ||||||||||| ||| | || |||| | ||||| || Sbjct 20346 ATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTTCGGAGACTTGTACATC 20288 Query 33026 TGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 || ||| |||||| || | ||||| || ||||||||| || || || || | Sbjct 20287 TG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAG 20229 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATA 33143 | | ||| ||||| || || | ||| || | ||| || || | ||| ||| | | Sbjct 20228 CGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTTG 20170 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203 |||| || | ||| |||||||| | ||||| || ||||| || || || || ||||| Sbjct 20169 TCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATT 20110 Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 | |||||| | | || ||||| ||||| ||| ||||| | ||| Sbjct 20109 TCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGG 20063 >seq28467 Length=106825 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| || | |||| | || | || ||| |||| |||||| Sbjct 81283 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 81342 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||| ||||| || || ||||| |||||| | || || |||||| ||| || Sbjct 81343 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGA 81402 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || |||| || ||| || ||| ||||||||||| || Sbjct 81403 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 81462 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| |||||||||||| |||| | ||||| |||||| Sbjct 81463 TCCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633404090490000