Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq18099 255 7e-63 seq25508 95.1 1e-14 seq996 95.1 1e-14 seq11964 91.5 2e-13 seq8695 86.0 7e-12 seq246 86.0 7e-12 seq5603 84.2 2e-11 seq17638 82.4 8e-11 seq13354 82.4 8e-11 seq982 82.4 8e-11 >seq18099 Length=159039 Score = 255 bits (282), Expect = 7e-63 Identities = 604/894 (68%), Gaps = 29/894 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||| || || || |||||| | || ||||| ||||| ||||| |||| Sbjct 20956 CATAACAGAAGCTTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTG 20897 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||| |||| | | || | | | ||||| | | ||| ||||| | | | Sbjct 20896 TAAACTTATCAACTCCATCCAATCAAACGGATTACTCACACCATAC-ACTTTAC-CATAC 20839 Query 92908 CAACTCGTAC--AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | | || || || || ||||| || ||||| || || |||||| |||||| |||| | Sbjct 20838 CCAAGCGCACCTAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGA 20779 Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 ||||| || | | ||| ||| || || ||||| | || ||| |||| || |||| Sbjct 20778 TTCATCCCAACCA-ACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAAC 20720 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTT----TTTGTACGACATA-A 93079 || || || || ||| ||| ||| | | || ||||| | | | Sbjct 20719 CGCATCACACACAATCG-----ACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA 20665 Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 | || || || || || || || || | ||||||||||| ||| || ||||| || Sbjct 20664 GTATAAATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTA 20605 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||| |||||||| || | ||||| |||||||| ||||| || || ||| || | Sbjct 20604 GAGAAAGTTAAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAA 20545 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || ||||||||||| || || || || || |||||||| || || || Sbjct 20544 CCAGAGAAGAATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGA 20485 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | | | |||||| | | |||||| | ||||| || ||| |||||| | ||| Sbjct 20484 GA--TCCATC-GATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTT 20428 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| || |||| | ||||| || | |||| |||||||| |||| | Sbjct 20427 TCGATTGCACGGAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGA 20368 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||||||||||| || ||||||| |||||| || || ||||||||||||||||| | Sbjct 20367 AGAGAATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGC 20308 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACC 93498 ||||| | || || || || ||| | |||| |||| ||||| || || || Sbjct 20307 GCTTCGGAGACTTGTACATC-TGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCC 20249 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG--TTTCTCATCATCTTTA 93556 || ||||| || || ||||| | || || || || || || ||||| | || || Sbjct 20248 GTCAGATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTC--CGTCGTTG 20191 Query 93557 AGCTTATCCCAATC-GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 || || ||||| || | | | |||| ||| ||||||||||||||| | ||||| || || Sbjct 20190 AGATTTTCCCAGTCACGGTTG-TCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 20132 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||||| ||||| |||||||| ||||| || | | | || ||||| ||||| || Sbjct 20131 TGCTTCGGCTTTCTTGTACATTTCCCAGATCTGTGGGTAGTGAATCGGAAACAT 20078 >seq25508 Length=71553 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 60988 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 60929 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| |||||||| ||||||| Sbjct 60928 GTGGGTTCAAACCCCACTTCTGACAA 60903 >seq996 Length=13161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 9755 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 9696 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| |||||||| ||||| |||||| || Sbjct 9695 GTGGGTTCAAACCCCACTTCTGAC--ATTATTTTT 9663 >seq11964 Length=89146 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/106 (80%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | | |||| Sbjct 86253 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGT 86310 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 |||||| || |||||| ||| |||| | || || |||||| ||| Sbjct 86311 GGGTTCAAATCCCACAGCTGTCAAA-TCTTTTTACCATTTTTTTTG 86355 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | ||||| ||| | | |||| Sbjct 81407 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCCGTTAAGGGCGT 81349 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 81348 GGGTTCAAATCCCACAGCTGTCAA 81325 >seq8695 Length=30287 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | | |||| Sbjct 7116 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGT 7059 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 7058 GGGTTCAAATCCCACAGCTGTCAA 7035 >seq246 Length=121241 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 97793 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 97852 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| |||||||| ||||||| Sbjct 97853 GTGGGTTCAAACCCCACTTCTGACAA 97878 >seq5603 Length=8005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 2745 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 2688 Query 126328 TTCGAACCCCACACCTGACA 126347 ||| || |||||| ||| || Sbjct 2687 TTCAAATCCCACAGCTGTCA 2668 >seq17638 Length=94143 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 55440 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 55499 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||||| |||||| Sbjct 55500 TGGGTTCAAACCCCACTTCTGACA 55523 >seq13354 Length=55885 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 10491 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 10550 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| |||||||| |||||| || Sbjct 10551 TGGGTTCAAACCCCACTTCTGACATAT 10577 >seq982 Length=21847 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 9946 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 9889 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 9888 TTCAAATCCCACAGCTGTCAAA 9867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556660504131000