Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1368 102 2e-16
seq22893 91.5 3e-13
seq22516 89.7 1e-12
seq21172 89.7 1e-12
seq25817 87.8 4e-12
seq22508 87.8 4e-12
seq20845 87.8 4e-12
seq20757 87.8 4e-12
seq19684 87.8 4e-12
seq15593 87.8 4e-12
seq14405 87.8 4e-12
seq13829 87.8 4e-12
seq10684 87.8 4e-12
seq6944 87.8 4e-12
seq6448 87.8 4e-12
seq5881 84.2 4e-11
>seq1368
Length=7918
Score = 102 bits (112), Expect = 2e-16
Identities = 194/286 (68%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576
||||||| | |||| || || || | ||||| | |||| | || | || |||||
Sbjct 3712 TGACTTCGTGAACAAAGAACTGATCTTGTTCTCCATGGCTGATCTTCAGAGGTCAATTCC 3771
Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636
| |||| ||||||||||| || ||| | ||||| || || |||||||| |
Sbjct 3772 CTCAATGGTCGATGGCCTCAAACCGGGTCAGAGAAAGATACTTTTCTGTTCATTCAAGAG 3831
Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696
||| | | ||| ||||| || || || ||||||||||| || || ||| |
Sbjct 3832 AAACTTCACTAGGGAAGCCAAGGTTGCCCAATTCTCTGGTTATGTGTCAGAGCATTCAGC 3891
Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756
|| || ||||| ||||||||||| || |||| | || ||||| ||||| || ||
Sbjct 3892 TTATCACCACGGCGAGCAGAGTCTTGCCAGTACCATCATCGGAATGGCCCAGGATTACGT 3951
Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802
|| || ||||| || ||| |||| | || | ||||| ||||||
Sbjct 3952 TGGTAGCAACAATATCAACCTGCTTCAGCCAATAGGTCAATTTGGT 3997
>seq22893
Length=62586
Score = 91.5 bits (100), Expect = 3e-13
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||
Sbjct 57664 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 57723
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 57724 AGCCCCAC 57731
>seq22516
Length=82561
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 63109 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 63050
Query 142562 GCCCCAC 142568
|||||||
Sbjct 63049 GCCCCAC 63043
>seq21172
Length=21299
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 19766 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 19707
Query 142562 GCCCCAC 142568
|||||||
Sbjct 19706 GCCCCAC 19700
>seq25817
Length=36442
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 10379 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10320
Query 142563 CCCCAC 142568
||||||
Sbjct 10319 CCCCAC 10314
>seq22508
Length=16261
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 8468 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8409
Query 142563 CCCCAC 142568
||||||
Sbjct 8408 CCCCAC 8403
>seq20845
Length=109154
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 98852 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 98793
Query 142563 CCCCAC 142568
||||||
Sbjct 98792 CCCCAC 98787
>seq20757
Length=7935
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 1333 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1392
Query 142563 CCCCAC 142568
||||||
Sbjct 1393 CCCCAC 1398
>seq19684
Length=100171
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 49687 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 49746
Query 142563 CCCCAC 142568
||||||
Sbjct 49747 CCCCAC 49752
>seq15593
Length=70921
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 33755 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 33696
Query 142563 CCCCAC 142568
||||||
Sbjct 33695 CCCCAC 33690
>seq14405
Length=20136
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2768 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2827
Query 142563 CCCCAC 142568
||||||
Sbjct 2828 CCCCAC 2833
>seq13829
Length=14302
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2093 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2034
Query 142563 CCCCAC 142568
||||||
Sbjct 2033 CCCCAC 2028
>seq10684
Length=16725
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 11138 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11079
Query 142563 CCCCAC 142568
||||||
Sbjct 11078 CCCCAC 11073
>seq6944
Length=61004
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 57213 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 57272
Query 142563 CCCCAC 142568
||||||
Sbjct 57273 CCCCAC 57278
>seq6448
Length=76080
Score = 87.8 bits (96), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565
|||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||||
Sbjct 65118 CCGGATAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 65177
Query 142566 CAC 142568
|||
Sbjct 65178 CAC 65180
>seq5881
Length=720
Score = 84.2 bits (92), Expect = 4e-11
Identities = 74/91 (81%), Gaps = 5/91 (5%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 464 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 405
Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTG 142593
|||||| | |||| |||| | |||||||
Sbjct 404 CCCCACGTTGGGC----GTCGTC-TCTTTTG 379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027457857449775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |