Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1368 102 2e-16 seq22893 91.5 3e-13 seq22516 89.7 1e-12 seq21172 89.7 1e-12 seq25817 87.8 4e-12 seq22508 87.8 4e-12 seq20845 87.8 4e-12 seq20757 87.8 4e-12 seq19684 87.8 4e-12 seq15593 87.8 4e-12 seq14405 87.8 4e-12 seq13829 87.8 4e-12 seq10684 87.8 4e-12 seq6944 87.8 4e-12 seq6448 87.8 4e-12 seq5881 84.2 4e-11 >seq1368 Length=7918 Score = 102 bits (112), Expect = 2e-16 Identities = 194/286 (68%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||||||| | |||| || || || | ||||| | |||| | || | || ||||| Sbjct 3712 TGACTTCGTGAACAAAGAACTGATCTTGTTCTCCATGGCTGATCTTCAGAGGTCAATTCC 3771 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | |||| ||||||||||| || ||| | ||||| || || |||||||| | Sbjct 3772 CTCAATGGTCGATGGCCTCAAACCGGGTCAGAGAAAGATACTTTTCTGTTCATTCAAGAG 3831 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||| | | ||| ||||| || || || ||||||||||| || || ||| | Sbjct 3832 AAACTTCACTAGGGAAGCCAAGGTTGCCCAATTCTCTGGTTATGTGTCAGAGCATTCAGC 3891 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || || ||||| ||||||||||| || |||| | || ||||| ||||| || || Sbjct 3892 TTATCACCACGGCGAGCAGAGTCTTGCCAGTACCATCATCGGAATGGCCCAGGATTACGT 3951 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || || ||||| || ||| |||| | || | ||||| |||||| Sbjct 3952 TGGTAGCAACAATATCAACCTGCTTCAGCCAATAGGTCAATTTGGT 3997 >seq22893 Length=62586 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 57664 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 57723 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 57724 AGCCCCAC 57731 >seq22516 Length=82561 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 63109 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 63050 Query 142562 GCCCCAC 142568 ||||||| Sbjct 63049 GCCCCAC 63043 >seq21172 Length=21299 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 19766 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 19707 Query 142562 GCCCCAC 142568 ||||||| Sbjct 19706 GCCCCAC 19700 >seq25817 Length=36442 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10379 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10320 Query 142563 CCCCAC 142568 |||||| Sbjct 10319 CCCCAC 10314 >seq22508 Length=16261 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8468 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8409 Query 142563 CCCCAC 142568 |||||| Sbjct 8408 CCCCAC 8403 >seq20845 Length=109154 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 98852 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 98793 Query 142563 CCCCAC 142568 |||||| Sbjct 98792 CCCCAC 98787 >seq20757 Length=7935 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1333 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1392 Query 142563 CCCCAC 142568 |||||| Sbjct 1393 CCCCAC 1398 >seq19684 Length=100171 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 49687 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 49746 Query 142563 CCCCAC 142568 |||||| Sbjct 49747 CCCCAC 49752 >seq15593 Length=70921 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 33755 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 33696 Query 142563 CCCCAC 142568 |||||| Sbjct 33695 CCCCAC 33690 >seq14405 Length=20136 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2768 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2827 Query 142563 CCCCAC 142568 |||||| Sbjct 2828 CCCCAC 2833 >seq13829 Length=14302 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2093 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2034 Query 142563 CCCCAC 142568 |||||| Sbjct 2033 CCCCAC 2028 >seq10684 Length=16725 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 11138 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11079 Query 142563 CCCCAC 142568 |||||| Sbjct 11078 CCCCAC 11073 >seq6944 Length=61004 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 57213 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 57272 Query 142563 CCCCAC 142568 |||||| Sbjct 57273 CCCCAC 57278 >seq6448 Length=76080 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565 |||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||||| Sbjct 65118 CCGGATAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 65177 Query 142566 CAC 142568 ||| Sbjct 65178 CAC 65180 >seq5881 Length=720 Score = 84.2 bits (92), Expect = 4e-11 Identities = 74/91 (81%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 464 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 405 Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTG 142593 |||||| | |||| |||| | ||||||| Sbjct 404 CCCCACGTTGGGC----GTCGTC-TCTTTTG 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027457857449775