Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq24711 125 5e-24 seq8442 111 1e-19 seq5576 100 2e-16 seq7697 96.9 2e-15 seq25505 95.1 9e-15 seq14351 93.3 3e-14 seq18065 87.8 1e-12 seq18044 84.2 2e-11 >seq24711 Length=27656 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || || |||||||| || ||||| ||||| ||| | | Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || ||||||||| | ||| |||| Sbjct 4712 GACACTATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 4771 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || || || ||||| | |||| |||| |||||||| Sbjct 4772 CAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 4831 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || |||||||||||| |||| || ||| |||| || || Sbjct 4832 ATCCAGAAAGAGTCTACTCTTCATTTGGTGTTGCGTCTACGTGGTGG 4878 >seq8442 Length=60656 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||||||| || | |||||| | || || ||||| |||||| | ||| || | | Sbjct 44032 AATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 43973 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | ||| | ||| || || ||||| || || | ||| | || | Sbjct 43972 AGACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 43913 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || ||||| ||||| |||||||| || || ||| | | |||||||| Sbjct 43912 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCTTGGAGATTACAA 43853 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||| ||||| ||| |||| ||||||| |||| ||| Sbjct 43852 TATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGGA 43804 >seq5576 Length=16168 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| |||| ||||||||||| || | || ||| | || Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| |||||||| || | ||| ||||| Sbjct 1193 GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCAA 1134 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || ||||| ||||| ||| ||| | || ||||||||| Sbjct 1133 CAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACAAT 1074 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || || |||||||| || ||||| Sbjct 1073 ATCCAAAAGGAATCAACACTTCA 1051 >seq7697 Length=17472 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| | || || | || || |||||||||||| | || ||| | || Sbjct 10191 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 10132 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || || || || || | ||| | || Sbjct 10131 GACACAATAGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 10072 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||| || || || ||||| |||||| || ||| | || |||||||| Sbjct 10071 CAGAGACTTATCTTCGCAGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACAAC 10012 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||||||||| ||||||||| |||| | ||| | || || ||| Sbjct 10011 ATCCAGAAGGAATCGACTCTTCATTTGGTTCTTCGTCTTCGTGGTGGA 9964 >seq25505 Length=75187 Score = 95.1 bits (104), Expect = 9e-15 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| |||| | | ||||||||| | ||||||||||| |||||||| ||| Sbjct 56601 GACAAAGAGGGAATACCACCAGATCAACAGAGATTGATCTTTGCTGGTAAACAACTTGAA 56660 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT- 22045 ||| ||| | || || |||||||||||||| || || ||||||||| |||| || Sbjct 56661 GATGGCCGAACACTAGCGGACTACAATATTCAGAAAGAGTCGACTCTTCATTTGGTCTTG 56720 Query 22046 ACGTTTACGAGGAGGA 22061 | | ||| | |||||| Sbjct 56721 AGGCTTA-GGGGAGGA 56735 >seq14351 Length=15190 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||| | || ||| | || ||| | ||||| |||||||||||| | ||| || | || Sbjct 4392 ATGTAGATCTTTGTCAAGACACTCACGGGTAAAACCATTACCCTAGAAGTCGAGAGCTCA 4451 Query 21894 GAAACGGTGGCCGATCTTAA-GCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || |||| || ||| || || || || || | ||| |||| Sbjct 4452 GACACCATTGACAATGTTAAAGCTAAA--TTCAAGACAAGGAAGGGATCCCTCCGGACCA 4509 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || |||||| |||| |||||||| || ||| |||| | || ||||| || Sbjct 4510 ACAGAGGCTCATCTTT-CTGGAAAACAACTTGAGGATGGTCGAACTCTTGCTGATTATAA 4568 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 |||||||||||||| |||||||| Sbjct 4569 CATTCAGAAGGAATCAACTCTTCA 4592 >seq18065 Length=21122 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || || |||||||||||| | ||| || | || Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 | || | | | || ||||| | ||| |||||||| || | ||| |||| Sbjct 12467 TACACCATTGACAATGTTAAGGCGGAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 12526 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| || ||||| || || ||| ||| | || ||||| || Sbjct 12527 CAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGACTTTAGCGGATTATAAC 12586 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||| || ||||| || |||||| |||| | ||| | |||| ||| Sbjct 12587 ATTCTAAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGGA 12634 >seq18044 Length=6213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || || ||||| |||||| | ||| || | || Sbjct 3304 ATGCAGATATTTGTCAAGACTCTTACTGGTAAAACAATTACCCTAGAAGTCGAGAGCTCA 3245 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| |||||| || || || || | ||| |||| Sbjct 3244 GACACCATTGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCAG 3185 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || ||||| || || ||| ||| | || |||||||| Sbjct 3184 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGTCGAACCCTTGCAGATTACAAC 3125 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||||||| || || ||| |||| Sbjct 3124 ATTCAGAAGGAATCAACCCTGCATTTGGT 3096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357999207311350