Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2366 102 7e-17 seq13163 98.7 9e-16 >seq2366 Length=14026 Score = 102 bits (112), Expect = 7e-17 Identities = 194/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||| ||||| || || | || | || || || |||||||||||| || || Sbjct 9548 ACCACAAACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTAC 9607 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 || | |||||| || | || | |||||||| ||||| ||||| || || | || || Sbjct 9608 ACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTCGCAAC 9667 Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418 |||||| || | |||||||| || || ||||| ||||||| | || | || || Sbjct 9668 ATAAAACTGTGAAAACAAGTGGCATGGAGGAAGGGCCATCAGTTTAAGATCAGGAGGATT 9727 Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAA 20474 ||| || |||| || || | || ||| | ||||| || || || | || | || | Sbjct 9728 CCAAGCCGACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAA-CTAC-A 9785 Query 20475 TGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || | | || ||||| || ||||| ||||| ||||||| Sbjct 9786 TCTA--AAAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 9825 >seq13163 Length=108863 Score = 98.7 bits (108), Expect = 9e-16 Identities = 222/331 (67%), Gaps = 2/331 (1%) Strand=Plus/Minus Query 20187 TTTTGTAGATGTGGGCATCTCCCAACGTG-TGAATAAACTCCCCGGGTCTAAGACCAGTA 20245 ||||||| | || ||||| ||||| | || |||| || || || |||| || Sbjct 36799 TTTTGTACACATGAGCATC-CCCAATAAGATGGGTAAAATCACCAGGAACAAGATCACAC 36741 Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || |||| | || || ||| ||||||||||| || || || | | Sbjct 36740 ACGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGA 36681 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| || ||||| || || || ||||| || Sbjct 36680 CCCATATCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCAACATAGAAC 36621 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||||| | || | || ||||| || Sbjct 36620 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGATCAGAAGGATTCCAAGCC 36561 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 | | || || | | ||| | ||||| ||||| || || | | | | | | Sbjct 36560 GATAATATAATGCGCCGATCATCAGGATTGTTTTTGATCTTGTCGATTACATCTGCGAGT 36501 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || || || ||||| ||||||| Sbjct 36500 TGATCAAATCCTTGACCAGTATAATCAGCAT 36470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441214043721000