Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq2366 102 7e-17
seq13163 98.7 9e-16
>seq2366
Length=14026
Score = 102 bits (112), Expect = 7e-17
Identities = 194/282 (69%), Gaps = 8/282 (3%)
Strand=Plus/Plus
Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298
|||| ||| ||||| || || | || | || || || |||||||||||| || ||
Sbjct 9548 ACCACAAACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTAC 9607
Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358
|| | |||||| || | || | |||||||| ||||| ||||| || || | || ||
Sbjct 9608 ACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTCGCAAC 9667
Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418
|||||| || | |||||||| || || ||||| ||||||| | || | || ||
Sbjct 9668 ATAAAACTGTGAAAACAAGTGGCATGGAGGAAGGGCCATCAGTTTAAGATCAGGAGGATT 9727
Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAA 20474
||| || |||| || || | || ||| | ||||| || || || | || | || |
Sbjct 9728 CCAAGCCGACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAA-CTAC-A 9785
Query 20475 TGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516
| || | | || ||||| || ||||| ||||| |||||||
Sbjct 9786 TCTA--AAAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 9825
>seq13163
Length=108863
Score = 98.7 bits (108), Expect = 9e-16
Identities = 222/331 (67%), Gaps = 2/331 (1%)
Strand=Plus/Minus
Query 20187 TTTTGTAGATGTGGGCATCTCCCAACGTG-TGAATAAACTCCCCGGGTCTAAGACCAGTA 20245
||||||| | || ||||| ||||| | || |||| || || || |||| ||
Sbjct 36799 TTTTGTACACATGAGCATC-CCCAATAAGATGGGTAAAATCACCAGGAACAAGATCACAC 36741
Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305
|| ||||| || || |||| | || || ||| ||||||||||| || || || | |
Sbjct 36740 ACGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGA 36681
Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365
||||| || | || | |||||||| ||||| || ||||| || || || ||||| ||
Sbjct 36680 CCCATATCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCAACATAGAAC 36621
Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425
|| |||| ||| || || ||||| ||||||||| | || | || ||||| ||
Sbjct 36620 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGATCAGAAGGATTCCAAGCC 36561
Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485
| | || || | | ||| | ||||| ||||| || || | | | | | |
Sbjct 36560 GATAATATAATGCGCCGATCATCAGGATTGTTTTTGATCTTGTCGATTACATCTGCGAGT 36501
Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516
|| ||||| || || || ||||| |||||||
Sbjct 36500 TGATCAAATCCTTGACCAGTATAATCAGCAT 36470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441214043721000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |