Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4225 140 2e-28 seq18065 114 9e-21 seq18044 107 1e-18 seq24711 105 5e-18 seq14351 95.1 9e-15 seq17640 93.3 3e-14 seq7697 93.3 3e-14 seq5576 91.5 1e-13 seq28288 86.0 4e-12 seq27144 86.0 4e-12 seq25811 82.4 5e-11 >seq4225 Length=52512 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| || ||| |||||||| || || ||||| || ||||||||||| | Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| |||||||||||||||| || || | |||||||| || ||||| |||| Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||| || ||| ||| | || || || || | ||| || Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 2914 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||| || || || || || || ||||| || || || ||||| Sbjct 2915 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2961 >seq18065 Length=21122 Score = 114 bits (126), Expect = 9e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| || | ||| ||||| || || || || || || |||||||| || Sbjct 12405 CCACCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 12346 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTC-GTTTGG 15068 ||| | | | ||||| | |||||| || || | || | | |||||| || | ||| Sbjct 12345 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGCCTCTGTTGATCCGGATGG 12286 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||||| ||| ||||| |||||| | ||||| || ||| |||| | Sbjct 12285 A-TTCCTTCCTTGTCTTGAATCTTTGC-CTTTACATTGTCTATTGTGTCGGAGCTTTCAA 12228 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| | || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 12227 CGTCAAGTGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 12179 >seq18044 Length=6213 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| || | ||| ||||| ||||| || || || || ||||||||||| Sbjct 3078 CCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCA 3137 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | ||||| || || | |||| | ||| ||||| || Sbjct 3138 AGGGTTCGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGG 3197 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| |||||| ||| ||| | || || || || | || || Sbjct 3198 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACT 3257 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| |||||| |||||||| || ||||| || ||||| || ||||| Sbjct 3258 TCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304 >seq24711 Length=27656 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || |||||||| ||||| ||||| || ||||||||||| | | |||| ||||| Sbjct 4863 AACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTTCTGCCGTCT 4804 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || ||||| | ||||| | ||| ||||| ||||| || || ||||| Sbjct 4803 TCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 4744 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||| || ||| | || ||||| ||| |||| || || || ||||| || Sbjct 4743 TGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAACTTCCAAAGTAATAGTC 4684 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || || ||||| || |||||| Sbjct 4683 TTGCCCGTCAAGGTCTTAACAAAGATCTGCATA 4651 >seq14351 Length=15190 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || |||| ||| || | ||| ||||| || || || || || || ||||||||||| ||| Sbjct 4390 CCTCCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCCGCT 4331 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | ||||| | || || ||||| | ||||| | || ||||| || Sbjct 4330 -AGAGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTTTGCTGGTCCGGAGG 4272 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| || || | || || || || | |||| || Sbjct 4271 AATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCTGAACTTTCGAC 4212 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| ||||| || ||||| || ||||| || |||||| Sbjct 4211 CTCAAGGGTTATGGTCTTACCAGTAAGAGTCTTGACAAAGATCTGCATA 4163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| | || | ||||| || || || || || ||||| ||||| Sbjct 4616 CCACCACGGAGTCTCAGCACAAGGTGAAGAGTTGATTCCTTCTGAATGTTATAATCAGCA 4557 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | || || | |||||| |||| | || | | ||||||||| || Sbjct 4556 AGAGTTCGACCATCCTCAAGTTGTTTTCCAGAA-AGATGAGCCTCTGTTGGTCCGGAGGG 4498 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||| ||||| ||| | || || || || | || || Sbjct 4497 ATCCCTTCCTTGTCTTGAATTTAGCTTTA-ACATTGTCAATGGTGTCTGAGCTCTCGACT 4439 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||||||||||||||| || || || || ||||| || | |||| Sbjct 4438 TCTAGGGTAATGGTTTTACCCGTGAGTGTCTTGACAAAGATCTACATA 4391 >seq17640 Length=82317 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| || |||| | | ||||||| | ||| Sbjct 53349 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCGAGTTG 53290 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | || ||||| || ||||| ||| |||||||||||||| || || Sbjct 53289 TTTTCCAGCGAAGATTAAACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 53230 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || || ||||| ||| || || | || || || || || || Sbjct 53229 GGCTTTGACATTGTCGATGGTATCAGATGATTCAACCTCGAGAGTGATTGTCTTCCCCGT 53170 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 53169 TAGGGTTTTCACGAAGATCTGCAT 53146 >seq7697 Length=17472 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || ||||||||||| ||| ||||| | ||||| | ||| Sbjct 10673 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCTCCCATCTTCAAGTTGC 10732 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | | ||| || || ||||| ||||||||||| || || Sbjct 10733 TTACCAGCGAAGATAAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTA 10792 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || ||||| ||| | || || || | |||||||| || || ||| Sbjct 10793 GCTTTCACATTGTCAATAGTGTCGGAGCTCTCCACCTCAAGAGTAATGGTCTTGCCGGTC 10852 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | ||| || ||||| || |||||| Sbjct 10853 AAAGTCTTCACAAAGATCTGCATA 10876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || || || || ||||||||||| ||| | || | ||||| Sbjct 9982 AACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTTCCATCTTC 10041 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | || | | ||| || || ||||| ||||||||||| Sbjct 10042 AAGTTGCTTACCTGCGAAGATAAGTCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 10101 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | ||||| || || | || || || | |||||||||||| Sbjct 10102 GATCTTAGCCTTCACATTGTCTATTGTGTCTGAGCTCTCCACCTCAAGGGTAATGGTTTT 10161 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || || || || || || || |||||| Sbjct 10162 ACCAGTGAGGGTCTTCACGAATATCTGCATA 10192 >seq5576 Length=16168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || ||||| || |||||||| ||| | | | || || | ||| Sbjct 823 TGAAGTGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCGAGCTGT 882 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | |||| | ||||||||| | || ||||||||||| ||| ||| Sbjct 883 TTACCAGCGAAGATCAGTCTCTGTTGGTCCGGAGTGATCCCTTCCTTGTCTTGAATCTTG 942 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || | || || ||||||||||||||||| || || Sbjct 943 GCCTTGACGTTGTCGATGGTGTCTGAGCTCTCAACTTCTAAGGTAATGGTTTTGCCAGTT 1002 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||||| ||||| |||||||| Sbjct 1003 AAGGTTTTCACAAAGATTTGCAT 1025 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||| || || ||||| || || |||||||| ||| | | | | | ||||||| || Sbjct 595 TGAAGTGTTGACTCTTTCTGAATATTGTAATCAGCTAA-AGTCCGACCATCTTCTAGCTG 653 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || || || | || | | ||||||||| |||||| ||||| ||||| || || Sbjct 654 CTTCCCGGCAAAGATTAGCCTCTGTTGGTCCGGTGGAATCCCTTCTTTGTCTTGTATCTT 713 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || || | || || ||||| | ||||| || | ||||||||||| |||| Sbjct 714 TGCCTTC-ACGTTATCAATCGTATCAGAGCTCTCTACCTCAAGAGTAATGGTTTTCCCTG 772 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 ||| |||||| ||||| |||||||| Sbjct 773 TCAAAGTTTTGACAAAGATTTGCAT 797 >seq28288 Length=9629 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||||| || || ||||| || |||||||| || ||| ||| || | || || | | Sbjct 4821 TGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCT---AATGTCCGACCATCCTCGAGT 4765 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||| |||||| | || | | ||| ||||| || || ||||||||||| ||| Sbjct 4764 TGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGAATC 4705 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 || || || | || ||||| || || || || |||| |||||| |||||||| Sbjct 4704 TTCGCCTTGACGTTGTCAATAGTGTCTGAGTTCTCAACTTCTAGGGTAATAGTTTTACCA 4645 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| ||||| || |||||| Sbjct 4644 GTGAGGGTTTTCACAAAGATCTGCATA 4618 >seq27144 Length=112545 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || |||||||| || |||| | | ||||||| | |||| Sbjct 90296 TGAAGTGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCGAGTTGT 90355 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || || || ||||| || ||| |||||||||||||| || ||| Sbjct 90356 TTTCCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTG 90415 Query 15094 CTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || || | || ||| || || | || || || || ||||| Sbjct 90416 GCCTTGACATTGTCGATGGTGTC-CGATGATTCAACCTCGAGAGTGATCGTCTTCCCTGT 90474 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 90475 TAGGGTTTTCACGAAGATCTGCATCTTTG 90503 >seq25811 Length=7539 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || ||||| || |||||||| || ||| | | | || || |||||| Sbjct 453 TGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCAAGAGTACAACCATCCTCCAATTGT 394 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || || | |||| | ||| ||||| || ||||||||||| || || ||| Sbjct 393 TTACCCGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCTTGGATCTTT 334 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || ||||| || | |||| || | | ||| ||||| || ||||| Sbjct 333 GC-CTTGACATTGTCAATAGTGTCTGAACTTTCGACCTTAAGGGTTATGGTCTTGCCTGT 275 Query 15153 CAGAGTTTTTACAAAAATTTGC 15174 ||||| |||| ||| |||||| Sbjct 274 AAGAGTCTTTATAAAGATTTGC 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357266664300875