Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq4225 140 2e-28
seq18065 114 9e-21
seq18044 107 1e-18
seq24711 105 5e-18
seq14351 95.1 9e-15
seq17640 93.3 3e-14
seq7697 93.3 3e-14
seq5576 91.5 1e-13
seq28288 86.0 4e-12
seq27144 86.0 4e-12
seq25811 82.4 5e-11
>seq4225
Length=52512
Score = 140 bits (154), Expect = 2e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| |||| |||| || ||| |||||||| || || ||||| || ||||||||||| |
Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| |||| |||||||||||||||| || || | |||||||| || ||||| ||||
Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| ||| || ||| ||| | || || || || | ||| ||
Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 2914
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|||| ||| || || || || || || ||||| || || || |||||
Sbjct 2915 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2961
>seq18065
Length=21122
Score = 114 bits (126), Expect = 9e-21
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| ||| || | ||| ||||| || || || || || || |||||||| ||
Sbjct 12405 CCACCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 12346
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTC-GTTTGG 15068
||| | | | ||||| | |||||| || || | || | | |||||| || | |||
Sbjct 12345 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGCCTCTGTTGATCCGGATGG 12286
Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| ||||||||||||| ||| ||||| |||||| | ||||| || ||| |||| |
Sbjct 12285 A-TTCCTTCCTTGTCTTGAATCTTTGC-CTTTACATTGTCTATTGTGTCGGAGCTTTCAA 12228
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|||| | || ||||| || ||||| ||||| |||||||| ||||||||
Sbjct 12227 CGTCAAGTGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 12179
>seq18044
Length=6213
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| ||| || | ||| ||||| ||||| || || || || |||||||||||
Sbjct 3078 CCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCA 3137
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| ||| | || || | ||||| || || | |||| | ||| ||||| ||
Sbjct 3138 AGGGTTCGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGG 3197
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| |||||| ||| ||| | || || || || | || ||
Sbjct 3198 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACT 3257
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|||| |||||| |||||||| || ||||| || ||||| || |||||
Sbjct 3258 TCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304
>seq24711
Length=27656
Score = 105 bits (116), Expect = 5e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
|| || |||||||| ||||| ||||| || ||||||||||| | | |||| |||||
Sbjct 4863 AACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTTCTGCCGTCT 4804
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| | || || ||||| | ||||| | ||| ||||| ||||| || || |||||
Sbjct 4803 TCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 4744
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||| ||| || ||| | || ||||| ||| |||| || || || ||||| ||
Sbjct 4743 TGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAACTTCCAAAGTAATAGTC 4684
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || |||| || || ||||| || ||||||
Sbjct 4683 TTGCCCGTCAAGGTCTTAACAAAGATCTGCATA 4651
>seq14351
Length=15190
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
|| |||| ||| || | ||| ||||| || || || || || || ||||||||||| |||
Sbjct 4390 CCTCCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCCGCT 4331
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
||| | | | ||||| | || || ||||| | ||||| | || ||||| ||
Sbjct 4330 -AGAGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTTTGCTGGTCCGGAGG 4272
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||||||||| || || ||| || || | || || || || | |||| ||
Sbjct 4271 AATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCTGAACTTTCGAC 4212
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | ||| ||||| ||||| || ||||| || ||||| || ||||||
Sbjct 4211 CTCAAGGGTTATGGTCTTACCAGTAAGAGTCTTGACAAAGATCTGCATA 4163
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||| | || | ||||| || || || || || ||||| |||||
Sbjct 4616 CCACCACGGAGTCTCAGCACAAGGTGAAGAGTTGATTCCTTCTGAATGTTATAATCAGCA 4557
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| ||| | || || | |||||| |||| | || | | ||||||||| ||
Sbjct 4556 AGAGTTCGACCATCCTCAAGTTGTTTTCCAGAA-AGATGAGCCTCTGTTGGTCCGGAGGG 4498
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| ||||| ||||| ||| | || || || || | || ||
Sbjct 4497 ATCCCTTCCTTGTCTTGAATTTAGCTTTA-ACATTGTCAATGGTGTCTGAGCTCTCGACT 4439
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|||| ||||||||||||||| || || || || ||||| || | ||||
Sbjct 4438 TCTAGGGTAATGGTTTTACCCGTGAGTGTCTTGACAAAGATCTACATA 4391
>seq17640
Length=82317
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| || || || || || |||||||| || |||| | | ||||||| | |||
Sbjct 53349 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCGAGTTG 53290
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||| |||||| | || ||||| || ||||| ||| |||||||||||||| || ||
Sbjct 53289 TTTTCCAGCGAAGATTAAACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 53230
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| ||| ||| | || || ||||| ||| || || | || || || || || ||
Sbjct 53229 GGCTTTGACATTGTCGATGGTATCAGATGATTCAACCTCGAGAGTGATTGTCTTCCCCGT 53170
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| || || || |||||
Sbjct 53169 TAGGGTTTTCACGAAGATCTGCAT 53146
>seq7697
Length=17472
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || || || ||||| || ||||||||||| ||| ||||| | ||||| | |||
Sbjct 10673 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCTCCCATCTTCAAGTTGC 10732
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| |||||| | || | | ||| || || ||||| ||||||||||| || ||
Sbjct 10733 TTACCAGCGAAGATAAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTA 10792
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || ||||| ||| | || || || | |||||||| || || |||
Sbjct 10793 GCTTTCACATTGTCAATAGTGTCGGAGCTCTCCACCTCAAGAGTAATGGTCTTGCCGGTC 10852
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
| ||| || ||||| || ||||||
Sbjct 10853 AAAGTCTTCACAAAGATCTGCATA 10876
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| |||||||| || || || || || ||||||||||| ||| | || | |||||
Sbjct 9982 AACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTTCCATCTTC 10041
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||| || || ||| | || | | ||| || || ||||| |||||||||||
Sbjct 10042 AAGTTGCTTACCTGCGAAGATAAGTCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 10101
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|| || || ||| | ||||| || || | || || || | ||||||||||||
Sbjct 10102 GATCTTAGCCTTCACATTGTCTATTGTGTCTGAGCTCTCCACCTCAAGGGTAATGGTTTT 10161
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||| || || || || || || || ||||||
Sbjct 10162 ACCAGTGAGGGTCTTCACGAATATCTGCATA 10192
>seq5576
Length=16168
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| ||||| || ||||| || |||||||| ||| | | | || || | |||
Sbjct 823 TGAAGTGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCGAGCTGT 882
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| |||||| | |||| | ||||||||| | || ||||||||||| ||| |||
Sbjct 883 TTACCAGCGAAGATCAGTCTCTGTTGGTCCGGAGTGATCCCTTCCTTGTCTTGAATCTTG 942
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| || | || || || || | || || ||||||||||||||||| || ||
Sbjct 943 GCCTTGACGTTGTCGATGGTGTCTGAGCTCTCAACTTCTAAGGTAATGGTTTTGCCAGTT 1002
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| ||||| ||||| ||||||||
Sbjct 1003 AAGGTTTTCACAAAGATTTGCAT 1025
Score = 89.7 bits (98), Expect = 4e-13
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032
||||| || || ||||| || || |||||||| ||| | | | | | ||||||| ||
Sbjct 595 TGAAGTGTTGACTCTTTCTGAATATTGTAATCAGCTAA-AGTCCGACCATCTTCTAGCTG 653
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091
|| || || | || | | ||||||||| |||||| ||||| ||||| || ||
Sbjct 654 CTTCCCGGCAAAGATTAGCCTCTGTTGGTCCGGTGGAATCCCTTCTTTGTCTTGTATCTT 713
Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151
||| || || | || || ||||| | ||||| || | ||||||||||| ||||
Sbjct 714 TGCCTTC-ACGTTATCAATCGTATCAGAGCTCTCTACCTCAAGAGTAATGGTTTTCCCTG 772
Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176
||| |||||| ||||| ||||||||
Sbjct 773 TCAAAGTTTTGACAAAGATTTGCAT 797
>seq28288
Length=9629
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/207 (70%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCG--CGTCTTCTAAT 15030
||||| || || ||||| || |||||||| || ||| ||| || | || || | |
Sbjct 4821 TGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCT---AATGTCCGACCATCCTCGAGT 4765
Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090
||||| |||||| | || | | ||| ||||| || || ||||||||||| |||
Sbjct 4764 TGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGAATC 4705
Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150
|| || || | || ||||| || || || || |||| |||||| ||||||||
Sbjct 4704 TTCGCCTTGACGTTGTCAATAGTGTCTGAGTTCTCAACTTCTAGGGTAATAGTTTTACCA 4645
Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||| ||||| || ||||||
Sbjct 4644 GTGAGGGTTTTCACAAAGATCTGCATA 4618
>seq27144
Length=112545
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| || || || || || |||||||| || |||| | | ||||||| | ||||
Sbjct 90296 TGAAGTGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCGAGTTGT 90355
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | || || || ||||| || ||| |||||||||||||| || |||
Sbjct 90356 TTTCCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTG 90415
Query 15094 CTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| ||| | || || || || | || ||| || || | || || || || |||||
Sbjct 90416 GCCTTGACATTGTCGATGGTGTC-CGATGATTCAACCTCGAGAGTGATCGTCTTCCCTGT 90474
Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181
|| ||||| || || || ||||| ||||
Sbjct 90475 TAGGGTTTTCACGAAGATCTGCATCTTTG 90503
>seq25811
Length=7539
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/202 (70%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| || || ||||| || |||||||| || ||| | | | || || ||||||
Sbjct 453 TGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCAAGAGTACAACCATCCTCCAATTGT 394
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092
|| || || | |||| | ||| ||||| || ||||||||||| || || |||
Sbjct 393 TTACCCGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCTTGGATCTTT 334
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| || ||| | || ||||| || | |||| || | | ||| ||||| || |||||
Sbjct 333 GC-CTTGACATTGTCAATAGTGTCTGAACTTTCGACCTTAAGGGTTATGGTCTTGCCTGT 275
Query 15153 CAGAGTTTTTACAAAAATTTGC 15174
||||| |||| ||| ||||||
Sbjct 274 AAGAGTCTTTATAAAGATTTGC 253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357266664300875
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