Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 682 0.0
seq6667 560 1e-154
seq27581 96.9 4e-15
>seq11714
Length=14353
Score = 682 bits (756), Expect = 0.0
Identities = 747/993 (75%), Gaps = 0/993 (0%)
Strand=Plus/Plus
Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587
|||| ||||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 437 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 496
Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647
||||| ||||||||| | | || ||||| || || | || || ||||||| |||
Sbjct 497 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACTATC 556
Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707
|| | || |||||||| |||||||| || |||||||| ||||||||||||| ||| |
Sbjct 557 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 616
Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767
|||||| ||||| || || || || ||||| || || | |||||| || | ||||| ||
Sbjct 617 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 676
Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827
|||||||| ||| ||||| ||||||| || ||||| || || |||||||| || ||
Sbjct 677 ATTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 736
Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887
||| || || ||||||||||| ||||| | ||||| | || || ||| || ||
Sbjct 737 GTTATAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 796
Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947
|||||| | | || | ||| ||||| | ||||||||||| ||||| || || || ||
Sbjct 797 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 856
Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 8007
|| || ||||| || ||||| | |||||| || |||||||| || ||||||||||| ||
Sbjct 857 GCCGAATACACCCGCTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 916
Query 8008 TTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAA 8067
||||| |||| ||| ||||||| ||||||||||| || ||||||||| | ||||| ||
Sbjct 917 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 976
Query 8068 AGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGA 8127
| |||||||| | || |||| | ||| ||||||| ||| || ||||| ||||| ||
Sbjct 977 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGA 1036
Query 8128 GTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACC 8187
||||| ||| ||||| ||||||||||| |||||| || ||||||||||||||||||
Sbjct 1037 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1096
Query 8188 CATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTT 8247
||| || | | ||| | | ||||| | | || |||| ||||||| |||||
Sbjct 1097 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1156
Query 8248 GTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGC 8307
||| ||||| ||||||| || || ||||||||||| || || || || | |||||||||
Sbjct 1157 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAAACCAATAGC 1216
Query 8308 GTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGC 8367
||||| ||||| || ||||| || || || ||||| || || | || || ||||
Sbjct 1217 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1276
Query 8368 GACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA 8427
|| |||||||| || || ||||| || || ||||||||||| | ||| |||| || ||
Sbjct 1277 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1336
Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487
| || || | | | ||||| ||||||| ||||| ||||| || | || ||
Sbjct 1337 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1396
Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520
|||||| | ||| ||||| ||||||||||||
Sbjct 1397 ACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1429
>seq6667
Length=26159
Score = 560 bits (620), Expect = 1e-154
Identities = 734/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322
|||||||| || | ||| | || || ||||| |||| || ||||||||| || |||||
Sbjct 9112 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 9171
Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382
| |||||||| ||||| | |||||| || || || || || || |||||||| |||
Sbjct 9172 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 9231
Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442
|| || || ||||| |||||||| | ||| || || ||||| |||||||| || | |||
Sbjct 9232 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 9291
Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502
|| | || || || | | |||| | |||| | ||| | || || |||||
Sbjct 9292 TTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 9351
Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562
| |||||||||||||| |||||| |||||| || || | |||||||| || |||||
Sbjct 9352 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 9411
Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622
||||| ||||| |||||||| ||||| || || || |||| || || | ||| || |
Sbjct 9412 AAACGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 9471
Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682
|| ||||||| |||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 9472 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 9531
Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742
|| || |||| || | || | | ||| || || |||||||||||||| ||||| |
Sbjct 9532 GCGCATAGCAGGGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 9591
Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802
||||| || || || || || | ||||| | ||| || ||||| || || ||||||||
Sbjct 9592 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 9651
Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862
|||||||||||||||| || || || || ||||| || || |||||||| |||||
Sbjct 9652 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAA 9711
Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921
|||||||| |||||||| || ||||||||||| || || || | | || || || ||
Sbjct 9712 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGCCGCA-ATTGAACGGATCGAGC 9770
Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981
| ||||| || || | ||| |||||||| | || || || |||||||| || |||||
Sbjct 9771 AAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAA 9830
Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041
|| ||| || || || | ||| ||| || |||||||| || ||||| ||||||||
Sbjct 9831 AGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 9890
Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101
|| | | | |||||| | | | | ||||||||| || || ||||| || | ||
Sbjct 9891 CAGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTCGAAACGGCAGCGGTTAAAAA 9950
Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161
||| || || || | ||| ||| ||| | || ||||| ||||| || || || ||
Sbjct 9951 ATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 10010
Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221
||| || |||| |||||| || | || | || ||| ||| || || | ||||| ||
Sbjct 10011 TGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGCACAAGGAAAGAGCAATAGACCAGA 10070
Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275
|||||| |||||||| || | || | | | ||||||||| | | ||||||
Sbjct 10071 CCAACCTACAAAAACAAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 10124
>seq27581
Length=27377
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 10213 TCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACACAGGTCAGA 10272
|| || ||||||| | |||||| | ||| || ||||||| | |||| || |||
Sbjct 7250 TCTTCTTCTTTGTGAGTCTCAATGGTAACATCAGAGGTAGGATAAGCAGCACAAGTGAGA 7309
Query 10273 AGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTACCGTA 10332
| || || || | ||||| |||||||| ||||| || || |||||| || |
Sbjct 7310 ACAAATCCTTCAGCAATCTGTTCATCATCGAGGAAACTCTGGTCTGATTGATCGACAGAT 7369
Query 10333 CCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTTGAGG 10392
|| || | | ||| |||||||| || ||||| | |||||| ||||| ||||| |
Sbjct 7370 CCAGACTTAACTTTACCTGCACAGCTAGAACATGAACCAGCACGGCAAGAGTAAGGCAAA 7429
Query 10393 TCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAGCACACTC 10445
|| || |||||||||||||| || || || | ||| ||||| | |||||
Sbjct 7430 TCGATTCCTGCTTCTTCAGCTGCGTCGAGGACGTAAACGTCGTCGTCGCACTC 7482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621901029486000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |