Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq24711 116 4e-21 seq16226 114 1e-20 seq5576 102 9e-17 seq7697 89.7 6e-13 seq14351 86.0 7e-12 >seq24711 Length=27656 Score = 116 bits (128), Expect = 4e-21 Identities = 160/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| ||||||||| ||||||||||||||||||||| | | || || | Sbjct 5095 ACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGACC 5036 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| ||||| || ||||| | ||||||||| | || | | ||||| Sbjct 5035 ATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCCTT 4976 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 || |||||| ||| | ||| | | | ||||| ||| ||||| || | | Sbjct 4975 ATCTTGGATCTTTGCCTTCA-CGTTGTCAATAGTGTCAGAACTC---TCCACCTCGAGGG 4920 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| || || |||| || ||||| ||||||||||| Sbjct 4919 TAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4880 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || ||||| |||||| |||||||||||||| | | ||| || | Sbjct 5323 ACGCAACACCAAGTGTAATGTGGACTCCTTCTGGATATTGTAGTCAGCCAAAGTCCGACC 5264 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || || | ||||||||||| | || | | |||||| Sbjct 5263 ATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTT 5204 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| |||||| ||| | ||| | | | ||||| |||| ||||| || | | Sbjct 5203 GTCCTGGATCTTAGCCTTCA-CGTTGTCAATTGTGTCTGAGCTC---TCCACCTCAAGAG 5148 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || |||| || ||||| || || ||||| Sbjct 5147 TGATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCAT 5108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||||||||||| ||| | ||| ||| || ||||| ||||| || | Sbjct 4878 CCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 4819 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| || |||||||| || || || ||||| | ||||||||| | || Sbjct 4818 AAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGA 4759 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| ||||| ||| | | | | |||||| ||| || Sbjct 4758 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAACT 4699 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || |||||||||| || ||||||||||| ||||| Sbjct 4698 TCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCAT 4652 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | ||| ||||| ||||||||||| || | | || || | Sbjct 4411 ACGCAACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCC 4352 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | ||||| || ||||| ||||| | |||||| || | || | | ||||| Sbjct 4351 GTCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTT 4292 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| |||||| ||| | ||| | | | ||| || |||||| || | |||| Sbjct 4291 ATCCTGAATCTTC-GCTTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGA 4233 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || || || ||||| |||||||| ||||| Sbjct 4232 TTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 4196 >seq16226 Length=39664 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || ||| || |||||||||||||| | ||||| | | Sbjct 11833 ACGCAACACCAAGTGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGCCAGAGTTCTACC 11892 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || || ||||| |||||||| ||||| | ||||||||| | || | | ||| || Sbjct 11893 GTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTT 11952 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | |||||| ||| || |||| |||| Sbjct 11953 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAACTTCCAAGGTGA 12011 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| |||| || || ||||| || ||||| Sbjct 12012 TGGTCTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 12048 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | || ||||||||||| || | ||| |||||| ||||| |||||||| | Sbjct 11366 CCTCCACGTAGACGCAACACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCA 11425 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || |||||||| || ||||| ||||| | |||||||| | || Sbjct 11426 AGAGTGCGACCATCTTCAAGCTGCTTTCCAGCGAAGATCAACCTTTGCTGGTCCGGTGGG 11485 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||||||| ||| || ||||| ||| | | | ||||| |||| || Sbjct 11486 ATTCCCTCCTTGTCTTGGATTTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTC---TC 11541 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | || || || || || || | || || |||||||| ||||| Sbjct 11542 CACCTCGAGGGTAATAGTCTTACCAGTTAAGGTCTTGACAAAGATCTGCAT 11592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | ||| |||||| ||||| |||||||| | ||||| || | Sbjct 11605 ACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGACC 11664 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| ||||| || ||||| | ||||||||| | || | | ||| || Sbjct 11665 ATCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTT 11724 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 ||| ||||| ||| ||| | | | ||||| |||| || || || | | Sbjct 11725 GTCTTGAATCTT-GGCTTTCACGTTGTCGATGGTGTCTGAGCTC---TCAACCTCGAGAG 11780 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| || || |||| || || || ||||| ||||| Sbjct 11781 TAATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 11820 >seq5576 Length=16168 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || || | |||| |||||||||||||||||| || | |||||||| | Sbjct 810 ACGTAGCACAAGGTGAAGTGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTGCGACC 869 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||| || || ||||| |||| | ||| ||||| | | | | ||||| Sbjct 870 ATCCTCGAGCTGTTTACCAGCGAAGATCAGTCTCTGTTGGTCCGGAGTGATCCCTTCCTT 929 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 ||| ||||| ||||| ||| | | | ||||| |||| || || || | | Sbjct 930 GTCTTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTC---TCAACTTCTAAGG 985 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||||||||| || | ||||| |||||||||||||| Sbjct 986 TAATGGTTTTGCCAGTTAAGGTTTTCACAAAGATTTGCAT 1025 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||||| |||| || | || |||||||||||| ||||| || | Sbjct 1255 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 1314 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || |||| |||||||| || ||||| || || | | || ||||| | || Sbjct 1315 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 1374 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| ||||| | | || |||||| ||| || Sbjct 1375 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCGGAGCTTTCGACC 1434 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| |||||||| || ||||| || ||||||||||| Sbjct 1435 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 1481 >seq7697 Length=17472 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | |||| ||| || ||||| |||||||| | |||||| | | Sbjct 10888 ACGCAACACAAGGTGGAGTGTAGACTCTTTCTGGATGTTGTAGTCTGCTAGAGTCCTTCC 10947 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || ||||| || ||||| || | | ||||| || | || | | ||| || Sbjct 10948 ATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGAATTCCCTCTTT 11007 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 |||| |||||| ||||| | | | ||| || |||| || || || | || Sbjct 11008 GTCCTGGATCTTTGCCTTGACGTTATCGATCGTATCAGAGCTC---TCAACCTCAAGAGT 11064 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || |||| || || |||||||||||||| Sbjct 11065 GATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 11103 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || || | |||| ||||| || ||||| |||||||||||||| | Sbjct 11105 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTTGATTCCTTCTGGATATTGTAGTCTGCC 11164 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || ||||| || || ||||| ||||| | ||||| || | || Sbjct 11165 AAAGTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGA 11224 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||||||||| |||||| ||||| | | | ||||| |||| || Sbjct 11225 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATAGTGTCAGAGCTC---TCG 11281 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || ||||| || || || || ||||| || || |||||||| Sbjct 11282 ACCTCGAGAGTTATGGTCTTTCCAGTAAGTGTTTTCACGAATATTTGCAT 11331 >seq14351 Length=15190 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | |||| || | ||| |||||| ||||| ||||| || | Sbjct 4162 CCACCTCTGAGACGAAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGCA 4103 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || |||||||| || ||||| || ||||| | ||||||||| | || Sbjct 4102 AGAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 4043 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || || ||||| ||||| | | | |||||| ||| || Sbjct 4042 ATTCCTTCTTTATCTTGAATCTTAGCCTTGACACTGTCAATTGTGTCGGAGCTTTCGACC 3983 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| ||||| || || || || |||||||||||||| Sbjct 3982 TCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 3936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565035090813000