Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7697 95.1 8e-15 seq4225 91.5 1e-13 seq24711 89.7 4e-13 seq18044 86.0 4e-12 seq5576 86.0 4e-12 seq16226 84.2 2e-11 >seq7697 Length=17472 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| || ||||| || | ||| |||||||| || || || || || Sbjct 10421 CCACCTCTGAGACGAAGCACCAAGTGGAGAGTAGACTCTTTTTGGATGTTGTAGTCTGCG 10480 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | || |||||| |||| || | | ||||||||||| || Sbjct 10481 AGTGTGCGACCATCCTCTAGCTGCTTCCCGGCAAAGATAAGTCTCTGCTGATCCGGTGGG 10540 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| || | | | | |||||||| ||| ||||| Sbjct 10541 ATTCCCTCTTTGTCTTGGATTTTGGCCTTGACATTATCGATTGTGTCTGAGCTCTCCACC 10600 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| |||||||| || || | || || || ||||||||||| Sbjct 10601 TCCAAAGTGATTGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 10647 >seq4225 Length=52512 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || || || |||||||| | || |||||| || || || ||||| || Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | || || |||||||| ||| |||| || ||||| ||||| |||| || Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || ||| | | |||| | |||||| | ||| | Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGAT--TGTGTCCGAAGATTCAA 2912 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730 | || | || ||||| || ||||||| ||||| |||||||||||||| || | ||||| Sbjct 2913 CCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTC-TCTGTTT 2971 >seq24711 Length=27656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || ||| || || ||||| ||||| ||| Sbjct 4422 CCACCACGAAGACGCAACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCC 4363 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || |||||||| || || | || || || | ||||||||||| || Sbjct 4362 AAGGTACGTCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 4303 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || | | | || | || | ||| | | | || || | |||||||| Sbjct 4302 ATACCTTCCTTATC-CTGAATCTTCGCTTTAACGTTGTCGATCGTATCAGAACTTTCCAC 4244 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| ||||| || || || | |||||| || ||||||||||| Sbjct 4243 CTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 4196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||| | ||| ||||| || || || ||||| ||| Sbjct 4878 CCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 4819 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | || || | || || || |||| || || | |||||| |||| || Sbjct 4818 AAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGA 4759 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| || || || | | ||| || ||||| | |||||| | Sbjct 4758 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTGTCAATA--GTGTCGGAGCTTTCAA 4701 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||| || || ||||| || || || || ||||||||||| Sbjct 4700 CTTCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCAT 4652 >seq18044 Length=6213 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || |||||||||| || ||| || || || || ||||| || Sbjct 3078 CCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCA 3137 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||||| ||| |||| || | | |||||| |||| || Sbjct 3138 AGGGTTCGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGG 3197 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| ||||| | | | ||||||| ||| || || Sbjct 3198 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACT 3257 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||||||||||| || | ||| || || || |||||||| Sbjct 3258 TCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304 >seq5576 Length=16168 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||||||| ||||| || | ||| || ||||| || || ||||| ||| Sbjct 1255 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 1314 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || | || || | ||||| ||| |||| || | | || || |||| || Sbjct 1315 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 1374 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | | |||| ||||| | |||||| || Sbjct 1375 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCGGAGCTTTCGACC 1434 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || ||||| | |||||| |||||||| ||||| Sbjct 1435 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 1481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || ||||| ||||| || ||| || |||| || | || |||||| |||| Sbjct 607 TCTTTCTGAATATTGTAATCAGCTAAAGTCCGACCATCTTCTAGCTGCTTCCCGGCAAAG 666 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 |||| | ||| || |||| || | ||||||||||| ||| ||| || | | Sbjct 667 ATTAGCCTCTGTTGGTCCGGTGGAATCCCTTCTTTGTCTTGTATCTTTGCCTTCACGTTA 726 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | ||| || || || | |||||| ||||| || || |||||||| || Sbjct 727 TCAATCGTATCAGAGCTCTCTACCTCAAGAGTAATGGTTTTCCCTGTCAAAGTTTTGACA 786 Query 39709 AAGATCTGCAT 39719 ||||| ||||| Sbjct 787 AAGATTTGCAT 797 >seq16226 Length=39664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | ||| || || || ||||| ||||| ||||| ||| |||| Sbjct 12293 AGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCATCT 12352 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 |||||||| || || | || || || | ||||||||||| || | ||||| || || Sbjct 12353 TCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTATCC 12412 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || |||| ||| | | | ||||| | |||||||| || | || ||||| Sbjct 12413 TGGATCTTAGCCTTAA-CGTTGTCAATCGTGTCAGAACTTTCCACCTCGAGGGTGATTGT 12471 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | |||||| || ||||||||||| Sbjct 12472 CTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 12504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347247779109575