Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4131 143 3e-29 seq6542 138 1e-27 seq18099 127 3e-24 seq13097 91.5 2e-13 >seq4131 Length=60598 Score = 143 bits (158), Expect = 3e-29 Identities = 305/450 (68%), Gaps = 14/450 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 21075 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21134 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| |||| ||||| Sbjct 21135 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGA 21191 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| ||||||||| | ||||||||| || |||| |||| | | |||| | Sbjct 21192 TTAAGAGTTTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTA 21248 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||||| || || ||||| || |||||| || || Sbjct 21249 CCAACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTG 21308 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| ||||| | ||| || ||||| ||||||||||| ||||| | | | Sbjct 21309 AAAAGATCACGTACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCC 21368 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | |||| | |||||| ||| | |||||| || |||||| || | | || || Sbjct 21369 G-AGATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTT 21427 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297 ||||||||| || ||| | ||||| ||||| || |||||||| ||| || Sbjct 21428 ACCCGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGT 21487 Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| | ||| ||||| Sbjct 21488 GAACCTCTCAGGCTTCTTTAAAAACTCCAC 21517 >seq6542 Length=27459 Score = 138 bits (152), Expect = 1e-27 Identities = 293/428 (68%), Gaps = 17/428 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | || ||||| || | |||| |||||| |||| | || ||| Sbjct 11231 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAATACCGGTGTTACCTT--CAA 11174 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | ||||| |||| ||| ||||| | ||||||||| || Sbjct 11173 ATCCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT---C 11117 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| || | | | |||| | || || |||||||| ||||||| ||||| |||| Sbjct 11116 CACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGC 11057 Query 16093 ATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || ||||| || ||| ||| ||||| || || | ||| || ||||| Sbjct 11056 AGGGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTTGAGGCACCAACACCG 10998 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | ||| | || | || ||| || ||| || |||||| Sbjct 10997 ACAAACATCTCAACAAACTCAGAACCGG-AGATGGAGAAGAAAGGCACACCAGCTTCACC 10939 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| ||| || | ||| || || |||||||| || ||| ||||| |||| Sbjct 10938 AGCAATAGCTTTTGCCAAAAGGGTTTTTCCCGTACCAGGAGGACCAATAAGGAGAACACC 10879 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | || ||| ||| ||| | || | ||||||| || | ||| ||||| ||||||| Sbjct 10878 TTTCGGGATCCGGGCACCAACTGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAA- 10820 Query 16331 CTCTTCCA 16338 |||||| Sbjct 10819 --CTTCCA 10814 >seq18099 Length=159039 Score = 127 bits (140), Expect = 3e-24 Identities = 277/412 (67%), Gaps = 7/412 (2%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 || ||| |||| |||| ||| || |||||||| | |||||||||| ||| | ||| Sbjct 20420 GCAATCGAAACGATTCCTTGTGTTACCAAGAAAGCTCAATGGGCTATGACTTGGATCGAT 20479 Query 102159 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 102218 | || | | || ||||| || || | || || || |||||||| ||||| ||| Sbjct 20480 GGA---TCTCAAACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTC 20536 Query 102219 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 102278 ||||||||||||||||| | |||| ||||| ||||| || || |||||||| ||| | Sbjct 20537 TTCTCTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTA 20596 Query 102279 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGG 102336 ||||| |||||| | ||||| | ||||| || || ||| || || || | | | Sbjct 20597 ACTTTCTCTAACGAGTTAATCTCAAGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTG 20656 Query 102337 AACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGG 102396 | ||| | | || |||| || | | || | | | || ||||| | Sbjct 20657 A--TTTATACTCTGTTACGTACGAAGCTTAGTGAGGAAAGAGTGAAGTCGATTGTGTGTG 20714 Query 102397 AAGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTA 102456 | || ||||||||||||| | || ||| || || ||||| || || | | || | Sbjct 20715 ATGCGGTTGAGATTGAGAGAGAGTTTGTATGTGACGCGCTTCCTTGTGCGTTGGTTGGGA 20774 Query 102457 TGAATTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTT 102508 ||||| |||| |||| | |||||||||| ||| | ||||| ||||| Sbjct 20775 TGAATCGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGTTGTT 20826 >seq13097 Length=20508 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/282 (69%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||||||| ||||| ||||| ||||| || ||||| | |||||||| | Sbjct 15587 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 15644 Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | || |||||| | | ||| | || || |||||||||||||||||||| || || Sbjct 15645 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 15704 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || ||| ||||| || || ||||| | ||||| || || || | || || || Sbjct 15705 CAAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 15760 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 |||||| || | ||| || || | | || | ||| || ||| || || | || Sbjct 15761 ACCAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACTCCTGCCTC 15820 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||| ||||| || || Sbjct 15821 TCCGGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGG 15862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620519126718000