Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq4131 143 3e-29
seq6542 138 1e-27
seq18099 127 3e-24
seq13097 91.5 2e-13
>seq4131
Length=60598
Score = 143 bits (158), Expect = 3e-29
Identities = 305/450 (68%), Gaps = 14/450 (3%)
Strand=Plus/Plus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| || ||||| | || | ||| ||||| || || | | || |||||
Sbjct 21075 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21134
Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001
|| | || | || ||| || |||| ||||||||||||||||| |||| |||||
Sbjct 21135 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGA 21191
Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058
|||| ||||||||| | ||||||||| || |||| |||| | | |||| |
Sbjct 21192 TTAAGAGTTTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTA 21248
Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118
|| || ||||| || ||||||| || || ||||| || |||||| || ||
Sbjct 21249 CCAACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTG 21308
Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178
|| ||||| ||||| | ||| || ||||| ||||||||||| ||||| | | |
Sbjct 21309 AAAAGATCACGTACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCC 21368
Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237
| | |||| | |||||| ||| | |||||| || |||||| || | | || ||
Sbjct 21369 G-AGATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTT 21427
Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297
||||||||| || ||| | ||||| ||||| || |||||||| ||| ||
Sbjct 21428 ACCCGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGT 21487
Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327
| | |||||||| | ||| | ||| |||||
Sbjct 21488 GAACCTCTCAGGCTTCTTTAAAAACTCCAC 21517
>seq6542
Length=27459
Score = 138 bits (152), Expect = 1e-27
Identities = 293/428 (68%), Gaps = 17/428 (4%)
Strand=Plus/Minus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975
||||| || || | | || ||||| || | |||| |||||| |||| | || |||
Sbjct 11231 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAATACCGGTGTTACCTT--CAA 11174
Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035
| ||||||||||| || | ||||| |||| ||| ||||| | ||||||||| ||
Sbjct 11173 ATCCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT---C 11117
Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
|||| || | | | |||| | || || |||||||| ||||||| ||||| ||||
Sbjct 11116 CACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGC 11057
Query 16093 ATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151
| || ||||| || ||| ||| ||||| || || | ||| || |||||
Sbjct 11056 AGGGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTTGAGGCACCAACACCG 10998
Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210
||||||||||| ||||| | | ||| | || | || ||| || ||| || ||||||
Sbjct 10997 ACAAACATCTCAACAAACTCAGAACCGG-AGATGGAGAAGAAAGGCACACCAGCTTCACC 10939
Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270
||||| ||| || | ||| || || |||||||| || ||| ||||| ||||
Sbjct 10938 AGCAATAGCTTTTGCCAAAAGGGTTTTTCCCGTACCAGGAGGACCAATAAGGAGAACACC 10879
Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330
| || ||| ||| ||| | || | ||||||| || | ||| ||||| |||||||
Sbjct 10878 TTTCGGGATCCGGGCACCAACTGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAA- 10820
Query 16331 CTCTTCCA 16338
||||||
Sbjct 10819 --CTTCCA 10814
>seq18099
Length=159039
Score = 127 bits (140), Expect = 3e-24
Identities = 277/412 (67%), Gaps = 7/412 (2%)
Strand=Plus/Plus
Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158
|| ||| |||| |||| ||| || |||||||| | |||||||||| ||| | |||
Sbjct 20420 GCAATCGAAACGATTCCTTGTGTTACCAAGAAAGCTCAATGGGCTATGACTTGGATCGAT 20479
Query 102159 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 102218
| || | | || ||||| || || | || || || |||||||| ||||| |||
Sbjct 20480 GGA---TCTCAAACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTC 20536
Query 102219 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 102278
||||||||||||||||| | |||| ||||| ||||| || || |||||||| ||| |
Sbjct 20537 TTCTCTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTA 20596
Query 102279 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGG 102336
||||| |||||| | ||||| | ||||| || || ||| || || || | | |
Sbjct 20597 ACTTTCTCTAACGAGTTAATCTCAAGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTG 20656
Query 102337 AACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGG 102396
| ||| | | || |||| || | | || | | | || ||||| |
Sbjct 20657 A--TTTATACTCTGTTACGTACGAAGCTTAGTGAGGAAAGAGTGAAGTCGATTGTGTGTG 20714
Query 102397 AAGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTA 102456
| || ||||||||||||| | || ||| || || ||||| || || | | || |
Sbjct 20715 ATGCGGTTGAGATTGAGAGAGAGTTTGTATGTGACGCGCTTCCTTGTGCGTTGGTTGGGA 20774
Query 102457 TGAATTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTT 102508
||||| |||| |||| | |||||||||| ||| | ||||| |||||
Sbjct 20775 TGAATCGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGTTGTT 20826
>seq13097
Length=20508
Score = 91.5 bits (100), Expect = 2e-13
Identities = 194/282 (69%), Gaps = 12/282 (4%)
Strand=Plus/Plus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||||||||||||||| ||||| ||||| ||||| || ||||| | |||||||| |
Sbjct 15587 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 15644
Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| | || |||||| | | ||| | || || |||||||||||||||||||| || ||
Sbjct 15645 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 15704
Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147
|| ||| ||||| || || ||||| | ||||| || || || | || || ||
Sbjct 15705 CAAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 15760
Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207
|||||| || | ||| || || | | || | ||| || ||| || || | ||
Sbjct 15761 ACCAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACTCCTGCCTC 15820
Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
|| || | |||| || | ||| ||||| ||||| || ||
Sbjct 15821 TCCGGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGG 15862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620519126718000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |