Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4131 105 8e-18 seq21777 84.2 3e-11 seq18099 84.2 3e-11 seq28657 82.4 9e-11 >seq4131 Length=60598 Score = 105 bits (116), Expect = 8e-18 Identities = 296/447 (66%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | ||| |||||||| || | | ||| || || Sbjct 21075 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21134 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || ||||| ||||| || || || ||||| || Sbjct 21135 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 21194 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679 | || ||||| | ||||| || | | |||| | | | | ||| | |||| Sbjct 21195 AGAGTTTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCAGTTCCTCTTTGCCTACCA 21251 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| || || ||||| | || || || || || || | || | || |||| Sbjct 21252 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTGAAA 21311 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || |||||||| | || |||||||| || ||||||||||| || | | | || Sbjct 21312 AGATCACGTACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG 21371 Query 11800 CACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 | |||| |||||| ||| | ||||||||||||||| || | | || ||||| Sbjct 21372 -ATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTACC 21430 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 ||||||||| | |||| | || || | || ||||||||||||||| || | | Sbjct 21431 CGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGAA 21490 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | |||||||||||| | || ||||| Sbjct 21491 CCTCTCAGGCTTCTTTAAAAACTCCAC 21517 >seq21777 Length=19835 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGT 110330 ||| || |||| | ||||||||| |||||||||||||||| ||| || | || | | || Sbjct 3179 ACAAATCTGGGCAAAGCAATAGATGCAAGATTGCACACAGCAGTTTC-TGTTGGGCTAGT 3237 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 |||||| | ||||| || || || ||||| ||| ||| ||| | ||| | |||||| Sbjct 3238 GTATTCAATGATTTCAGTGCATAAATTGGATGACTTTATGGTACCAAGGTTTTGCTGATT 3297 Query 110391 CGATTTGGAGTTGCATGCATCCT 110413 ||| |||||||| ||||| Sbjct 3298 GCTTTTTCTGTTGCATGAATCCT 3320 >seq18099 Length=159039 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| ||||| || | ||||| | ||| ||| ||| | |||||||||||||| Sbjct 20637 TGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGCATGAGTCCA 20578 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| || || | ||| || ||||| ||||| || || || ||||| Sbjct 20577 CGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTTCAACACAA 20518 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| || | | ||| ||||| || | | |||| |||| ||| | | |||||| Sbjct 20517 GCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGTCATAGCCCA 20459 >seq28657 Length=142947 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||| || Sbjct 18891 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGATCCCTGTA 18832 Query 136777 GGGAACAGCTTTT 136789 | |||||||| Sbjct 18831 TAGGCCAGCTTTT 18819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588764152695000