Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq4131 105 8e-18
seq21777 84.2 3e-11
seq18099 84.2 3e-11
seq28657 82.4 9e-11
>seq4131
Length=60598
Score = 105 bits (116), Expect = 8e-18
Identities = 296/447 (66%), Gaps = 8/447 (2%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| || ||||| ||||| | || | ||| |||||||| || | | ||| || ||
Sbjct 21075 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21134
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|||| || | || ||||| | | || ||||| ||||| || || || ||||| ||
Sbjct 21135 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 21194
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679
| || ||||| | ||||| || | | |||| | | | | ||| | ||||
Sbjct 21195 AGAGTTTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCAGTTCCTCTTTGCCTACCA 21251
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
||||| || || ||||| | || || || || || || | || | || ||||
Sbjct 21252 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTGAAA 21311
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799
|| |||||||| | || |||||||| || ||||||||||| || | | | ||
Sbjct 21312 AGATCACGTACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG 21371
Query 11800 CACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858
| |||| |||||| ||| | ||||||||||||||| || | | || |||||
Sbjct 21372 -ATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTACC 21430
Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918
||||||||| | |||| | || || | || ||||||||||||||| || | |
Sbjct 21431 CGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGAA 21490
Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCAC 11945
| |||||||||||| | || |||||
Sbjct 21491 CCTCTCAGGCTTCTTTAAAAACTCCAC 21517
>seq21777
Length=19835
Score = 84.2 bits (92), Expect = 3e-11
Identities = 106/143 (74%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGT 110330
||| || |||| | ||||||||| |||||||||||||||| ||| || | || | | ||
Sbjct 3179 ACAAATCTGGGCAAAGCAATAGATGCAAGATTGCACACAGCAGTTTC-TGTTGGGCTAGT 3237
Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390
|||||| | ||||| || || || ||||| ||| ||| ||| | ||| | ||||||
Sbjct 3238 GTATTCAATGATTTCAGTGCATAAATTGGATGACTTTATGGTACCAAGGTTTTGCTGATT 3297
Query 110391 CGATTTGGAGTTGCATGCATCCT 110413
||| |||||||| |||||
Sbjct 3298 GCTTTTTCTGTTGCATGAATCCT 3320
>seq18099
Length=159039
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
||||| ||||| || | ||||| | ||| ||| ||| | ||||||||||||||
Sbjct 20637 TGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGCATGAGTCCA 20578
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| |||||| ||||| || || | ||| || ||||| ||||| || || || |||||
Sbjct 20577 CGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTTCAACACAA 20518
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686
||||| || | | ||| ||||| || | | |||| |||| ||| | | ||||||
Sbjct 20517 GCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGTCATAGCCCA 20459
>seq28657
Length=142947
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||| ||
Sbjct 18891 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGATCCCTGTA 18832
Query 136777 GGGAACAGCTTTT 136789
| ||||||||
Sbjct 18831 TAGGCCAGCTTTT 18819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588764152695000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |