Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq4131 150 2e-31
seq6542 145 9e-30
seq13097 98.7 1e-15
>seq4131
Length=60598
Score = 150 bits (166), Expect = 2e-31
Identities = 304/447 (68%), Gaps = 8/447 (2%)
Strand=Plus/Plus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|| ||||| || ||||| | || | ||| ||||| || || | | || || ||
Sbjct 21075 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21134
Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
|| | || | || ||| || | | ||||||||||||||||| |||| || || |||
Sbjct 21135 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 21194
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368
| ||||||||| | ||||||||| || |||| |||| | | |||| | ||
Sbjct 21195 AGAGTTTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 21251
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
|| ||||| || ||||||| || ||||| || || |||||| ||| ||| ||
Sbjct 21252 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTGAAA 21311
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488
||||| || |||||| ||| || ||||| ||||||||||| ||||| | | | | |
Sbjct 21312 AGATCACGTACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 21370
Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547
|||| | |||||| ||| | |||||| || |||||| || | | || |||||
Sbjct 21371 GATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTACC 21430
Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607
|||||| || ||| | ||||| |||| || |||||||| ||| || | |
Sbjct 21431 CGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGAA 21490
Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634
|||||||| | ||| | ||| |||||
Sbjct 21491 CCTCTCAGGCTTCTTTAAAAACTCCAC 21517
>seq6542
Length=27459
Score = 145 bits (160), Expect = 9e-30
Identities = 290/425 (68%), Gaps = 11/425 (3%)
Strand=Plus/Minus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || || | | || || || || | |||| |||||| || | | |||||
Sbjct 11231 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAATACCGGTGTTACCTTCAAAT 11172
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
||||||||||| || | || || |||| ||| ||||| | ||||||||| || |
Sbjct 11171 CCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCTCC---A 11115
Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
||| || | | | |||| | || || |||||||| ||||||| |||||||| ||
Sbjct 11114 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGCAG 11055
Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461
|| ||||| ||| | | || |||||||| || ||| ||| || ||||| |||
Sbjct 11054 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGACA 10995
Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520
|||||||| ||||| | | ||| | || | || ||| || ||| || |||||| ||
Sbjct 10994 AACATCTCAACAAACTCAGAACCGG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 10936
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580
||| ||| || | ||| || || |||||||| || ||| ||||| ||||
Sbjct 10935 AATAGCTTTTGCCAAAAGGGTTTTTCCCGTACCAGGAGGACCAATAAGGAGAACACCTTT 10876
Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
|| ||| ||| ||| | || | ||||||| || | ||| ||||| ||||||| |
Sbjct 10875 CGGGATCCGGGCACCAACTGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAA---C 10819
Query 9641 TTCCA 9645
|||||
Sbjct 10818 TTCCA 10814
>seq13097
Length=20508
Score = 98.7 bits (108), Expect = 1e-15
Identities = 192/280 (69%), Gaps = 8/280 (3%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||||||||||||||| ||||| || || ||||| || ||||| | |||||||| |
Sbjct 15587 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 15644
Query 9341 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | || |||||| | | ||| | || || |||||||||||||||||||| ||||||
Sbjct 15645 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 15704
Query 9399 CATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456
|| ||| ||||| || | ||||| | ||| | |||||| || || ||||
Sbjct 15705 CAAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACAC 15762
Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516
|||| || | ||| || || | | || | ||| || ||| || || | || |
Sbjct 15763 CAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACTCCTGCCTCTC 15822
Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
| || | |||| || | ||| ||||| ||||| || ||
Sbjct 15823 CGGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGG 15862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589768591281000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |