Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4131 150 2e-31 seq6542 145 9e-30 seq13097 98.7 1e-15 >seq4131 Length=60598 Score = 150 bits (166), Expect = 2e-31 Identities = 304/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 21075 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21134 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 21135 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 21194 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | ||||||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 21195 AGAGTTTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 21251 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||||| || ||||| || || |||||| ||| ||| || Sbjct 21252 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTGAAA 21311 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || |||||| ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 21312 AGATCACGTACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 21370 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 |||| | |||||| ||| | |||||| || |||||| || | | || ||||| Sbjct 21371 GATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTACC 21430 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 |||||| || ||| | ||||| |||| || |||||||| ||| || | | Sbjct 21431 CGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGAA 21490 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| | ||| ||||| Sbjct 21491 CCTCTCAGGCTTCTTTAAAAACTCCAC 21517 >seq6542 Length=27459 Score = 145 bits (160), Expect = 9e-30 Identities = 290/425 (68%), Gaps = 11/425 (3%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || | |||| |||||| || | | ||||| Sbjct 11231 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAATACCGGTGTTACCTTCAAAT 11172 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | || || |||| ||| ||||| | ||||||||| || | Sbjct 11171 CCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCTCC---A 11115 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | |||| | || || |||||||| ||||||| |||||||| || Sbjct 11114 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGCAG 11055 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||||| ||| | | || |||||||| || ||| ||| || ||||| ||| Sbjct 11054 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGACA 10995 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | ||| | || | || ||| || ||| || |||||| || Sbjct 10994 AACATCTCAACAAACTCAGAACCGG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 10936 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| ||| || | ||| || || |||||||| || ||| ||||| |||| Sbjct 10935 AATAGCTTTTGCCAAAAGGGTTTTTCCCGTACCAGGAGGACCAATAAGGAGAACACCTTT 10876 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || ||| ||| ||| | || | ||||||| || | ||| ||||| ||||||| | Sbjct 10875 CGGGATCCGGGCACCAACTGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAA---C 10819 Query 9641 TTCCA 9645 ||||| Sbjct 10818 TTCCA 10814 >seq13097 Length=20508 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||||||||||||||| ||||| || || ||||| || ||||| | |||||||| | Sbjct 15587 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 15644 Query 9341 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | || |||||| | | ||| | || || |||||||||||||||||||| |||||| Sbjct 15645 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 15704 Query 9399 CATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || ||| ||||| || | ||||| | ||| | |||||| || || |||| Sbjct 15705 CAAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACAC 15762 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 |||| || | ||| || || | | || | ||| || ||| || || | || | Sbjct 15763 CAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACTCCTGCCTCTC 15822 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || | |||| || | ||| ||||| ||||| || || Sbjct 15823 CGGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGG 15862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589768591281000