Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_015253.1 Length=127065 Score E Sequences producing significant alignments: (Bits) Value seq7810 178 1e-39 seq20250 111 1e-19 >seq7810 Length=38048 Score = 178 bits (196), Expect = 1e-39 Identities = 410/613 (67%), Gaps = 16/613 (3%) Strand=Plus/Minus Query 123227 AAAAGGAGGGAGATAAAATGCTAAGATACAAAGCCTATAAGTTTAGAATCTATCCAAATG 123286 ||| ||||| || ||||| ||| | ||||| ||||||||| | |||||||||||| Sbjct 15167 AAATGGAGGTGAATCAAATGATAATTAATAAAGCTTATAAGTTTCGTATCTATCCAAATC 15108 Query 123287 TAGAACAAGAGATACTTATTGCTAAAACAATTGGTTGCTCTCGTTTCATCTATAATCATT 123346 || ||||| || || ||| ||||| || ||||| ||||| || | | ||||||| Sbjct 15107 AAGCACAAGCAATTCTAATTAACAAAACGATAGGTTGTTCTCGCTTTGTATTCAATCATT 15048 Query 123347 TTCTTGGCTTATGGAATGAAACATATACTCAAACTGGAAAAGGTTTAACATTTAACGCCT 123406 | || | ||||| || | |||| | | ||||||||||||||||||| | | | Sbjct 15047 TCCTATCCCTATGGGATCACGCATACAAAGAGACTGGAAAAGGTTTAACATATGGTACAT 14988 Query 123407 GTTGTGCGATGCTTCCTAAGATGAAAAAAGAAGAAGAAACAGAATGGCTAAAAGAAGTGG 123466 | | ||| | |||||| ||||| | |||| | ||||| |||||||||| Sbjct 14987 GCTCTGCCAAACTTCCTGCCATGAAGA------AAGAGTTCGTTTGGCTCAAAGAAGTGG 14934 Query 123467 ATAGCAGGGCTATTCAATCTTC-GTTAAAACACTTGGCAGACGCTTATTCTCGTTTCTTT 123525 |||| | || ||||| || || ||| | || | || || || ||| | || || || Sbjct 14933 ATAGTATTGCGATTCAGTCGTCTGTTCGCA-ACCTTGCGGATGCATATACACGATTTTTC 14875 Query 123526 AAGAAACAAAATGCTAGACCTAAATTCAAGAGTAAAAAGAACCCAGTTCAAAGTTATACT 123585 || ||||||||| | || ||||| || ||||| || ||| |||||| Sbjct 14874 AAAAAACAAAATAGTGCCCCGCGTTTCAAATCCAAGAAGAATAACGTACAATCTTATACC 14815 Query 123586 ACTAAACGTACAAAGACTAATATTGCTATTGTTGATAAGAAATTGAAGTTACCTAAATTG 123645 || |||| ||||| |||||||| |||| | || ||| | ||||| || ||| | Sbjct 14814 ACAAAACAAACAAATGAAAATATTGCCGTTGTAGGGAACAAAATAAAGTTGCCCAAACTA 14755 Query 123646 GGACTTATTAAGTTTTCACAAA----GTAAAGTTCTTAAAGGACGTATTATCAATGCTAC 123701 || ||| || | |||| |||| || ||| | | ||||||||| | ||||| || Sbjct 14754 GGCCTTGTT-CGATTTCCCAAAAGTCGTGAAG---TAGAGGGACGTATTGTAAATGCGAC 14699 Query 123702 TATTTCACGTAGACCAAGTGGTAAATACTTTGTTTCATTGCTATGTGAAGAAGAAATATA 123761 | || ||| | || ||||| ||| ||||| ||| | || |||| |||| || | Sbjct 14698 TGTTAGACGAAACCCTTCTGGTAGATATTTTGTGTCACTATTAGTTGAAACAGAAGTACA 14639 Query 123762 TGAACTACCTAAAGTAAATTCTTCAATAGGTATTGACTTAGGTATTGCTGATTTTGCTAT 123821 ||||| || ||| | |||||| || || || || |||| | ||||| || || Sbjct 14638 AGAACTTCCGAAAACACATTCTTACATTGGGATAGATGTAGGACTAAAAGATTTCGCCAT 14579 Query 123822 CCTTTCGGATGGA 123834 | || |||||| Sbjct 14578 TTTGTCAGATGGA 14566 >seq20250 Length=26292 Score = 111 bits (122), Expect = 1e-19 Identities = 371/580 (64%), Gaps = 38/580 (7%) Strand=Plus/Minus Query 123256 AAAGCCTATAAGTTTAGAATCTATCCAAATGTAGAACAAGAGATACTTATTGCTAAAACA 123315 ||||||||||||||| | |||||||||||| || ||||| || || || ||||| Sbjct 7312 AAAGCCTATAAGTTTCGTATCTATCCAAATCAAGCACAAGCAATTCTAATCAACAAAACG 7253 Query 123316 ATTGGTTGCTCTCGTTTCATCTATAATCATTTTCTTGGCTTATGGAATGAAACATATACT 123375 ||||| || ||||| || | | |||||||| || |||||||||| | |||| | Sbjct 7252 ATTGGGTGTTCTCGCTTTGTATTCAATCATTTCCTATCCTTATGGAATCACGCATACAAA 7193 Query 123376 CAAACTGGAAAAGGTTTAACATTTAACGCCTGTTGTGCGATGCTTCCTAAGATGAAAAAA 123435 | || |||||||| || || | | || | ||| | || ||| ||||| | Sbjct 7192 GAGACAGGAAAAGGCTTGACCTATGGTATATGCTCTGCCAAACTACCTGCCATGAAGA-- 7135 Query 123436 GAAGAAGAAACAGAATGGCTAAAAGAAGTGGATAGCAGGGCTATTCAATCTTC-GTTAAA 123494 |||| | |||||||||||||||||||| | || ||||| || || ||| Sbjct 7134 ----AAGAGCTTGTTTGGCTAAAAGAAGTGGATAGTATTGCGATTCAGTCGTCTGTTCGC 7079 Query 123495 ACACTTGGCAGACGCTTATTCTCGTTTCTTTAAGAAACAAAATGCTAGACCTAAATTCAA 123554 | || | || || |||||| | || |||| |||| Sbjct 7078 A-ACCTTGCGGATGCTTATACGCG---CTTT--------AAAT----------------- 7048 Query 123555 GAGTAAAAAGAACCCAGTTCAAAGTTATACTACTAAACGTACAAAGACTAATATTGCTAT 123614 ||| |||||| || ||| |||||| || |||| ||||| |||||||| | Sbjct 7047 --CTAAGAAGAACAACGTACAATCTTATACCACAAAACAAACAAATGAAAATATTGCCGT 6990 Query 123615 TGTTGATAAGAAATTGAAGTTACCTAAATTGGGACTTATTAAGTTTTCACAAAGTAAAGT 123674 ||| | || ||| | ||||| || ||| | || ||| || ||| | ||||| | | Sbjct 6989 TGTAGGGAACAAAATAAAGTTGCCGAAACTAGGCCTTGTTCGATTTGCCAAAAGTCACGA 6930 Query 123675 TCTTAAAGGACGTATTATCAATGCTACTATTTCACGTAGACCAAGTGGTAAATACTTTGT 123734 | | || |||||| | |||||||| || || | || ||||| ||| ||||| Sbjct 6929 AGTAGAGGGGCGTATTGTAAATGCTACAGTTAGACAGAACCCTTCTGGTAGATATTTTGT 6870 Query 123735 TTCATTGCTATGTGAAGAAGAAATATATGAACTACCTAAAGTAAATTCTTCAATAGGTAT 123794 ||| | || |||| |||| || | |||| || ||| | |||||| || || || Sbjct 6869 GTCACTATTAGTTGAAACAGAAGTACAAAAACTTCCGAAAACACATTCTTACATTGGAAT 6810 Query 123795 TGACTTAGGTATTGCTGATTTTGCTATCCTTTCGGATGGA 123834 || |||| | ||||| ||||| | || |||||| Sbjct 6809 AGATGTAGGACTAAAAGATTTCGCTATTTTGTCAGATGGA 6770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406340648247150