Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq11714 589 3e-163 seq6667 581 4e-161 seq27581 118 1e-21 seq8694 82.4 9e-11 seq5 82.4 9e-11 >seq11714 Length=14353 Score = 589 bits (652), Expect = 3e-163 Identities = 734/1003 (73%), Gaps = 2/1003 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| ||||| || | || || || || | || ||||| Sbjct 1438 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTT 1379 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 179858 || ||| ||||||| || || | ||| | |||||| | || || |||| ||||| Sbjct 1378 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATT 1319 Query 179859 GCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179918 |||||||| || || || || ||||| || |||||||| || |||| || || | || Sbjct 1318 GCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTAC 1259 Query 179919 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 179978 || ||||| || || || ||||| || ||||| |||| || |||||| | || || Sbjct 1258 GGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTT 1199 Query 179979 TATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAA 180038 || || ||||||||||| ||||| |||| || ||||| || ||||| ||||||| || Sbjct 1198 TACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAA 1139 Query 180039 CTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTT 180098 || | || | ||||| | |||| | | || ||||||||||||||||||||| Sbjct 1138 CTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTT 1079 Query 180099 TCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGC 180157 || || |||||||||| || ||||| ||| || |||||||| ||||| || || || Sbjct 1078 AGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGC 1020 Query 180158 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCC 180217 ||| ||||||| ||| | |||| || | |||||||| || ||||| | ||||| Sbjct 1019 TGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCC 960 Query 180218 CCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCT 180277 || || || ||||| || ||||||| ||| |||| ||||| || ||||||||||| || Sbjct 959 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 900 Query 180278 GATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGC 180337 |||||||| || |||||| | || ||||| ||||| |||||||| || || || || Sbjct 899 TATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGC 840 Query 180338 AATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCA 180397 ||||| ||||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 839 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 780 Query 180398 GAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGG 180457 || | ||||||| || || ||||||||||| || || ||||| || ||||| ||||| Sbjct 779 TAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGG 720 Query 180458 ATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTT 180517 || || || || ||||||| || ||||| |||||||| || ||||| | || || Sbjct 719 TTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTT 660 Query 180518 CTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 180577 |||| | || || ||||| || || || || ||||| ||||| | || | |||||||| Sbjct 659 CTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCAT 600 Query 180578 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 180637 ||| |||||||| || |||||||| |||||||| || | ||||| ||||||| || || Sbjct 599 GGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGT 540 Query 180638 GCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGA 180697 | || |||||||| || | | ||||| ||| || ||||||||||||||||| || Sbjct 539 TATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 480 Query 180698 GCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGAG 180740 |||||||||||||||||||| || ||||| || |||| |||| Sbjct 479 ACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437 >seq6667 Length=26159 Score = 581 bits (644), Expect = 4e-161 Identities = 739/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||||||||| ||||| || |||||||| Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| |||| | ||||| ||| |||| || || || ||| Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| || || |||||||| |||||| | || ||| ||||| | Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || || || || || || |||||| | | | | |||||| | | |||| |||||| Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 9885 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 |||||||| || || ||||| || ||| ||| | || || || ||||||||||| Sbjct 9884 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 9825 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || |||||||| || ||||| | || ||||||||| | | ||||||||||||||||| Sbjct 9824 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 9765 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 || || | | || || || ||||| || || || || ||||| |||||||| || || Sbjct 9764 TCCGTTCA-ATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 9706 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 ||||| || || || ||||| || || ||||| |||||||||||||||| ||||| || Sbjct 9705 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 9646 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 ||| ||||| || || || ||| | ||||| |||| || |||||||||||||| | || Sbjct 9645 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 9586 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || || ||||||||||| || || ||| | ||||| | ||| | || | || ||||| Sbjct 9585 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCA 9526 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 |||| || || || |||||| | | | |||| ||||| |||||||| ||| || Sbjct 9525 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 9466 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| |||||||| ||||||||||| || || ||||| || ||||| Sbjct 9465 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTC 9406 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 || ||||| || |||| ||| |||||| | ||||| |||||||||||| | ||||| Sbjct 9405 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 9346 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 || || | ||| | |||| ||| | | || | | || || ||| | ||||| || Sbjct 9345 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 9286 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| |||||||| || ||||| |||||| | ||| | ||||| || || || ||||| || Sbjct 9285 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 9226 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 ||| || || || ||||| || || |||||| | ||||| ||| | || | ||||| Sbjct 9225 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 9166 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| ||| || | ||||||||||| || |||| | || ||||| || Sbjct 9165 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 9112 >seq27581 Length=27377 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || ||||| || || ||||| || | ||| || || || |||||||| ||| | ||| Sbjct 7458 CTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCATGT 7399 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| |||||| || || ||| | || ||||| ||||| || |||||| Sbjct 7398 TCTAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTCGATCAATCAGACCAGAGTTTCCTC 7339 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | |||||| ||||| || |||| |||||||||||| Sbjct 7338 GATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 7286 >seq8694 Length=35224 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 51 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 110 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 111 CCTACTTGGGGAG 123 >seq5 Length=4504 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 4237 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 4178 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 4177 CCTACTTGGGGAG 4165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610177247901000