Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq11714 544 9e-150 seq6667 363 2e-95 seq25013 125 8e-24 seq21422 105 8e-18 >seq11714 Length=14353 Score = 544 bits (602), Expect = 9e-150 Identities = 698/960 (73%), Gaps = 2/960 (0%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || Sbjct 1389 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTA 1330 Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 | ||||||||||| || ||||| || ||||| || || || | ||||| || | || | Sbjct 1329 TCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 1270 Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 || ||||| || || ||||| || || || ||||| || |||| | || ||||| Sbjct 1269 CTCTTCTT-TACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 1211 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || ||||||||||||||||| ||| | |||||||||||| | || || || Sbjct 1210 GGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 1151 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | | | | | ||||| | ||||| | | || ||||| | Sbjct 1150 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1091 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || |||||||||||||| ||||||||| || || Sbjct 1090 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1031 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | |||||| ||||| ||||| | |||||| ||||||| || || ||| Sbjct 1030 CCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 971 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| ||||| ||||| |||||||||||||||||| | || ||||| || ||| Sbjct 970 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 911 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 || |||||||| ||||| || || |||||| ||| ||||| || | ||||| || || Sbjct 910 CACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCC 851 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 |||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| Sbjct 850 CTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 791 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || | ||||| | |||||||||||||||||||| || ||||| ||| Sbjct 790 AATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTA 731 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || || ||||| ||||| || | ||||| || |||||| |||||||| || | Sbjct 730 GCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGT 671 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 | |||| |||||| |||| | || || || ||| || | ||||| || || | ||| Sbjct 670 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 611 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280 || |||| ||||| |||||| | ||||||||||| || ||||||||||| |||||| | Sbjct 610 ATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGT 551 Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340 | ||| | | || |||| |||| || | ||| | || ||| | ||||||||| Sbjct 550 CAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 491 Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 170400 |||||||||||| | ||||| ||||||||||| ||||||||||| ||| |||| || || Sbjct 490 GTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 431 >seq6667 Length=26159 Score = 363 bits (402), Expect = 2e-95 Identities = 702/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || || ||||| || |||| ||||||||| Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | ||| || ||| | || || || || || || Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || || ||||| || |||| | | | ||| | | |||| || ||||| Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 9885 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || ||| | ||| ||||| Sbjct 9884 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 9825 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | || || | || | | | |||||||| ||| | | |||||||| | || || Sbjct 9824 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 9765 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 || | | ||||| || ||| |||||||||||| | || || || || | Sbjct 9764 TCCGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 9705 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 |||| || || |||||||||||||| |||||||||| || || || ||| Sbjct 9704 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 9645 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || || || || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 9644 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 9585 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| || || || |||| || | || | |||| || |||||| Sbjct 9584 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCAT 9525 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 ||||| || || | || || || | ||||| || |||| | Sbjct 9524 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 9482 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| ||||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 9481 CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 9426 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || |||||||| || ||||| ||||||| || || ||| | | ||| Sbjct 9425 ACCGCTAACCGTTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 9366 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 9365 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 9306 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 || ||||| | ||||| | || || || || || || || || || | ||||| ||| Sbjct 9305 GGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 9246 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || ||||||||||| ||||| ||||| ||| | || |||||||| | || Sbjct 9245 GATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 9186 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | || || || ||||| ||| | ||||||| || || || ||||| Sbjct 9185 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 9126 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 9125 CGTGGAAACGCTCTTTAA 9108 >seq25013 Length=69919 Score = 125 bits (138), Expect = 8e-24 Identities = 183/257 (71%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777 || || ||||| || |||| || |||||||| ||| ||| |||||||||| Sbjct 47813 TGTTGAAACCTCCTGGGGAGTTTGGGGCTGATATTGTTGTTGGTTCCGCTCAAAGGTTTG 47754 Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837 || |||| ||||| ||||| |||||||||||||| || || || || || | |||||| Sbjct 47753 GTGTTCCGATGGGTTATGGTGGTCCTCATGCTGCGTTTTTGGCTACTTCACAAGAGTATA 47694 Query 153838 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGC 153895 |||||| ||| ||||| || ||| | | || ||| || ||| || || ||| Sbjct 47693 AGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCCTTTGGGAAGCCAGC 47636 Query 153896 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAA 153955 | | | || | |||||||| || |||||||| ||||| || ||||| || || || Sbjct 47635 TTTGCGTATGGCGATGCAGACTAGGGAACAGCATATTAGGAGGGATAAAGCCACTAGCAA 47576 Query 153956 CATCTGCACAGCTCAGG 153972 |||||| || ||||||| Sbjct 47575 CATCTGTACTGCTCAGG 47559 Score = 105 bits (116), Expect = 8e-18 Identities = 126/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 153260 TCTT-GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 153318 |||| ||||||||| |||||| || || ||||| |||||||||||||| ||||| | Sbjct 48269 TCTTAGAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATCTCTCAAG 48210 Query 153319 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAA 153378 |||| | || | || | |||| ||| ||| | || || || || || || ||||| | Sbjct 48209 GAAGGCTTGAGTCGTTGCTTAATTTCCAGACGATGATTACTGATCTCACTGGTTTACCTA 48150 Query 153379 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | | ||||| || | ||||| |||| |||||||| || ||||||||| Sbjct 48149 TGTCTAACGCTTCGTTGTTAGACGAAGGTACTGCAGCTGCTGAAGCAATG 48100 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/111 (77%), Gaps = 4/111 (4%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| || ||||| || | || || || ||||||||||| ||||||||||| Sbjct 45762 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 45703 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT--AGCAAAACATCTCACACCATTT 155126 |||||||| | ||||| || ||||| ||| ||||| | |||||||| Sbjct 45702 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGC--AACATTTGGCACCATTT 45654 >seq21422 Length=25677 Score = 105 bits (116), Expect = 8e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 |||||||| ||| ||| |||||||| ||| | |||||||| || || ||||| || Sbjct 2639 TGATATTGTTGTTGGTTCGGCTCAAAGGTTCGGTGTACCTATGGGTTACGGTGGTCCACA 2698 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG 153865 |||||| || || || || || | |||||||||| | ||| ||||| || ||| | || Sbjct 2699 TGCTGCCTTTTTAGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGG 2758 Query 153866 TC--AGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923 | ||| || ||| | || || |||| | | | || | |||||||| || Sbjct 2759 TGTTAGT--GTTGATTCTTCCGGGAAGCAAGCTTTACGTATGGCTATGCAGACTAGGGAA 2816 Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 || ||||| | || || ||||| || || ||||||||||| ||||||| Sbjct 2817 CAACATATACGCAGGGATAAAGCTACTAGCAACATCTGCACGGCTCAGG 2865 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| |||||| || || ||||| |||||||||||||| ||||| ||| || Sbjct 2160 GAGAATCCTGCTTGGTATACTCAATATACTCCTTATCAAGCTGAGATTTCTCAAGGACGA 2219 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | ||| || | | |||||||| ||| | || || || || || ||| | || || | Sbjct 2220 CTTGAATCTCTGCTTAATTACCAGACGGTAATTACTGATCTCACTGGACTCCCTATGTCG 2279 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 ||||| || | |||| |||| |||||| || ||||| || ||| Sbjct 2280 AACGCGTCCTTGCTAGACGAAGGAACTGCTGCTGCAGAGGCGATG 2324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579004464396000