Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 544 9e-150
seq6667 363 2e-95
seq25013 125 8e-24
seq21422 105 8e-18
>seq11714
Length=14353
Score = 544 bits (602), Expect = 9e-150
Identities = 698/960 (73%), Gaps = 2/960 (0%)
Strand=Plus/Minus
Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501
|||| |||||||||||| | ||||| || |||| | || ||| | | ||| ||
Sbjct 1389 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTA 1330
Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561
| ||||||||||| || ||||| || ||||| || || || | ||||| || | || |
Sbjct 1329 TCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 1270
Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620
|| ||||| || || ||||| || || || ||||| || |||| | || |||||
Sbjct 1269 CTCTTCTT-TACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 1211
Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680
|| | || || ||||||||||||||||| ||| | |||||||||||| | || || ||
Sbjct 1210 GGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 1151
Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740
||||||||| | | | | | ||||| | ||||| | | || ||||| |
Sbjct 1150 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1091
Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800
|||||||||| | | | | || |||||||||||||| ||||||||| || ||
Sbjct 1090 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1031
Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860
|| || | |||||| ||||| ||||| | |||||| ||||||| || || |||
Sbjct 1030 CCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 971
Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920
||||||||||| ||||| ||||| |||||||||||||||||| | || ||||| || |||
Sbjct 970 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 911
Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980
|| |||||||| ||||| || || |||||| ||| ||||| || | ||||| || ||
Sbjct 910 CACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCC 851
Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040
|||| || ||||||||||| | || ||||| | | ||||| ||||| |||||
Sbjct 850 CTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 791
Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100
| || || || | ||||| | |||||||||||||||||||| || ||||| |||
Sbjct 790 AATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTA 731
Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160
|| || || ||||| ||||| || | ||||| || |||||| |||||||| || |
Sbjct 730 GCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGT 671
Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220
| |||| |||||| |||| | || || || ||| || | ||||| || || | |||
Sbjct 670 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 611
Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280
|| |||| ||||| |||||| | ||||||||||| || ||||||||||| |||||| |
Sbjct 610 ATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGT 551
Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340
| ||| | | || |||| |||| || | ||| | || ||| | |||||||||
Sbjct 550 CAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 491
Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 170400
|||||||||||| | ||||| ||||||||||| ||||||||||| ||| |||| || ||
Sbjct 490 GTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 431
>seq6667
Length=26159
Score = 363 bits (402), Expect = 2e-95
Identities = 702/1038 (68%), Gaps = 21/1038 (2%)
Strand=Plus/Minus
Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588
|||||| || | || ||||||||| ||| || || ||||| || |||| |||||||||
Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065
Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648
|| || || | |||||||| || | | | || ||||||||| ||| || |||||
Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005
Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708
|| || ||||||||||| ||||| | ||| || ||| | || || || || || ||
Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945
Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768
|| || || ||||| || |||| | | | ||| | | |||| || |||||
Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 9885
Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828
|||||||||||||| ||| |||||||| ||| | || ||| | ||| |||||
Sbjct 9884 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 9825
Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888
|| | || || | || | | | |||||||| ||| | | |||||||| | || ||
Sbjct 9824 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 9765
Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948
|| | | ||||| || ||| |||||||||||| | || || || || |
Sbjct 9764 TCCGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 9705
Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008
|||| || || |||||||||||||| |||||||||| || || || |||
Sbjct 9704 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 9645
Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068
|| || || || ||||| | ||| | || | ||||| || || || ||||||||
Sbjct 9644 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 9585
Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128
|||||||| |||||||| || || || |||| || | || | |||| || ||||||
Sbjct 9584 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCAT 9525
Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188
||||| || || | || || || | ||||| || |||| |
Sbjct 9524 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 9482
Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248
|||| ||||||||||| ||| | || || || | ||||||||||| ||| |
Sbjct 9481 CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 9426
Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308
|| || ||| | || |||||||| || ||||| ||||||| || || ||| | | |||
Sbjct 9425 ACCGCTAACCGTTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 9366
Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368
|| ||| ||||||| || || || || | ||| | |||| || | || | ||
Sbjct 9365 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 9306
Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428
|| ||||| | ||||| | || || || || || || || || || | ||||| |||
Sbjct 9305 GGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 9246
Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488
|| || || || ||||||||||| ||||| ||||| ||| | || |||||||| | ||
Sbjct 9245 GATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 9186
Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548
|||||| | | || || || ||||| ||| | ||||||| || || || |||||
Sbjct 9185 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 9126
Query 171549 AGAGGTAACGCACTTTAA 171566
| || ||||| ||||||
Sbjct 9125 CGTGGAAACGCTCTTTAA 9108
>seq25013
Length=69919
Score = 125 bits (138), Expect = 8e-24
Identities = 183/257 (71%), Gaps = 4/257 (2%)
Strand=Plus/Minus
Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777
|| || ||||| || |||| || |||||||| ||| ||| ||||||||||
Sbjct 47813 TGTTGAAACCTCCTGGGGAGTTTGGGGCTGATATTGTTGTTGGTTCCGCTCAAAGGTTTG 47754
Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837
|| |||| ||||| ||||| |||||||||||||| || || || || || | ||||||
Sbjct 47753 GTGTTCCGATGGGTTATGGTGGTCCTCATGCTGCGTTTTTGGCTACTTCACAAGAGTATA 47694
Query 153838 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGC 153895
|||||| ||| ||||| || ||| | | || ||| || ||| || || |||
Sbjct 47693 AGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCCTTTGGGAAGCCAGC 47636
Query 153896 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAA 153955
| | | || | |||||||| || |||||||| ||||| || ||||| || || ||
Sbjct 47635 TTTGCGTATGGCGATGCAGACTAGGGAACAGCATATTAGGAGGGATAAAGCCACTAGCAA 47576
Query 153956 CATCTGCACAGCTCAGG 153972
|||||| || |||||||
Sbjct 47575 CATCTGTACTGCTCAGG 47559
Score = 105 bits (116), Expect = 8e-18
Identities = 126/170 (74%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 153260 TCTT-GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 153318
|||| ||||||||| |||||| || || ||||| |||||||||||||| ||||| |
Sbjct 48269 TCTTAGAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATCTCTCAAG 48210
Query 153319 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAA 153378
|||| | || | || | |||| ||| ||| | || || || || || || ||||| |
Sbjct 48209 GAAGGCTTGAGTCGTTGCTTAATTTCCAGACGATGATTACTGATCTCACTGGTTTACCTA 48150
Query 153379 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428
| | ||||| || | ||||| |||| |||||||| || |||||||||
Sbjct 48149 TGTCTAACGCTTCGTTGTTAGACGAAGGTACTGCAGCTGCTGAAGCAATG 48100
Score = 82.4 bits (90), Expect = 9e-11
Identities = 86/111 (77%), Gaps = 4/111 (4%)
Strand=Plus/Minus
Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077
||| || ||||| || ||||| || | || || || ||||||||||| |||||||||||
Sbjct 45762 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 45703
Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT--AGCAAAACATCTCACACCATTT 155126
|||||||| | ||||| || ||||| ||| ||||| | ||||||||
Sbjct 45702 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGC--AACATTTGGCACCATTT 45654
>seq21422
Length=25677
Score = 105 bits (116), Expect = 8e-18
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805
|||||||| ||| ||| |||||||| ||| | |||||||| || || ||||| ||
Sbjct 2639 TGATATTGTTGTTGGTTCGGCTCAAAGGTTCGGTGTACCTATGGGTTACGGTGGTCCACA 2698
Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG 153865
|||||| || || || || || | |||||||||| | ||| ||||| || ||| | ||
Sbjct 2699 TGCTGCCTTTTTAGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGG 2758
Query 153866 TC--AGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923
| ||| || ||| | || || |||| | | | || | |||||||| ||
Sbjct 2759 TGTTAGT--GTTGATTCTTCCGGGAAGCAAGCTTTACGTATGGCTATGCAGACTAGGGAA 2816
Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972
|| ||||| | || || ||||| || || ||||||||||| |||||||
Sbjct 2817 CAACATATACGCAGGGATAAAGCTACTAGCAACATCTGCACGGCTCAGG 2865
Score = 100 bits (110), Expect = 3e-16
Identities = 121/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323
||||||||| |||||| || || ||||| |||||||||||||| ||||| ||| ||
Sbjct 2160 GAGAATCCTGCTTGGTATACTCAATATACTCCTTATCAAGCTGAGATTTCTCAAGGACGA 2219
Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383
| ||| || | | |||||||| ||| | || || || || || ||| | || || |
Sbjct 2220 CTTGAATCTCTGCTTAATTACCAGACGGTAATTACTGATCTCACTGGACTCCCTATGTCG 2279
Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428
||||| || | |||| |||| |||||| || ||||| || |||
Sbjct 2280 AACGCGTCCTTGCTAGACGAAGGAACTGCTGCTGCAGAGGCGATG 2324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579004464396000
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