Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq11714 551 6e-152 seq6667 499 3e-136 >seq11714 Length=14353 Score = 551 bits (610), Expect = 6e-152 Identities = 692/947 (73%), Gaps = 2/947 (0%) Strand=Plus/Minus Query 162427 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 162486 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 1387 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1328 Query 162487 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 162546 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 1327 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1268 Query 162547 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 162606 || | || || ||||| || || || ||||| || |||| |||| || |||||| Sbjct 1267 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1208 Query 162607 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 162666 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 1207 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1148 Query 162667 CCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAA 162726 |||| |||| | || | ||||| | | || | | || ||||| ||||| Sbjct 1147 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1088 Query 162727 TGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACC 162785 |||||||| || |||||| ||||||||||| ||||| ||| || ||||| || || || Sbjct 1087 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCC 1029 Query 162786 TGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 162845 ||||||||| ||| | || || ||| || |||| || | |||||||| ||| ||||| Sbjct 1028 TGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGA 969 Query 162846 CGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCA 162905 | ||||| | || ||| |||||| ||||||| ||| |||| ||||| || ||||| Sbjct 968 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCA 909 Query 162906 CAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACT 162965 ||||||||| ||||| || || |||||||| || || || ||||| ||||| || || || Sbjct 908 CAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCT 849 Query 162966 GTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAAC 163025 || ||||| ||||| ||||| ||||| || ||| | || | || || || |||| Sbjct 848 ATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 789 Query 163026 TGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGC 163085 ||| || || | ||||||| ||||| ||||||||||| || || ||||| || || Sbjct 788 TGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGC 729 Query 163086 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC 163145 || |||||||| || || || |||||||| |||||||| |||||||| || ||||| Sbjct 728 TGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTC 669 Query 163146 CTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGT 163205 || || |||||| | || || ||||| || || || || ||||| || || | || | Sbjct 668 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 609 Query 163206 GTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCA 163265 |||||||| |||||||| || |||||||| |||||||| || | ||||| |||| Sbjct 608 TAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCA 549 Query 163266 GGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGT 163325 || || || | || || ||||| || || | |||||||| | ||||||||||| Sbjct 548 AGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 489 Query 163326 TATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCTG 163372 |||||| || || ||||||||||||||||| || ||||| || |||| Sbjct 488 TATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 442 >seq6667 Length=26159 Score = 499 bits (552), Expect = 3e-136 Identities = 726/1021 (71%), Gaps = 6/1021 (1%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || || || ||| | ||||||||||| Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| | Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || || || || |||||| | | | | |||||| || || || || ||||| Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCT-TTGTTGTTACTGTGGGG 9886 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || ||||| || ||| ||| | || || || ||| |||||| Sbjct 9885 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 9826 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || |||||||| || || || | || ||||| ||| | || ||||||||||||||||| Sbjct 9825 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 9766 Query 163980 CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGT 164039 || | | | || || ||||| || || ||||||||||| |||||||| || || Sbjct 9765 ATCCGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 9706 Query 164040 TAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGG 164099 | |||||| || || || || || |||||||| |||||||||| || || |||||| Sbjct 9705 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 9646 Query 164100 AGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAA 164159 || || || || || ||||| || | || | ||||| |||||||| ||||| ||||| Sbjct 9645 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 9586 Query 164160 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCA 164219 ||| || |||||||||||||| || ||| |||| |||| || |||||| |||||||| Sbjct 9585 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCA 9526 Query 164220 CGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGC 164279 || | || || |||||||| || | ||||||||| || ||||| || || || Sbjct 9525 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 9466 Query 164280 GTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 164339 ||| | | || || | ||||| |||||||| |||||||| || ||||| || ||||| Sbjct 9465 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTC 9406 Query 164340 GCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 164399 || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| ||||| Sbjct 9405 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 9346 Query 164400 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCG 164459 || || | ||| |||||| || |||| | | ||||| ||| | || || || Sbjct 9345 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 9286 Query 164460 TGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTT 164519 ||| || || || || || || || | ||||| |||||||| || || |||||||| Sbjct 9285 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 9226 Query 164520 CTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCA 164579 |||||| || || || | || |||||||| | ||||| ||| | || | || || Sbjct 9225 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 9166 Query 164580 GC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAA 164637 || || || ||| || | ||||| || || || || || | || || || |||||| Sbjct 9165 GCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 9108 Query 164638 T 164638 | Sbjct 9107 T 9107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557383444005000