Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_015286.1
Length=175230
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 601 4e-167
seq6667 596 2e-165
>seq11714
Length=14353
Score = 601 bits (666), Expect = 4e-167
Identities = 718/984 (73%), Gaps = 0/984 (0%)
Strand=Plus/Minus
Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156
||| | ||||||||| | || ||||| || | || ||||| || ||| |||||||||||
Sbjct 1420 TGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1361
Query 167157 ACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGAC 167216
|| || | | ||||| | ||| || ||||| ||| | | ||||||||| || ||
Sbjct 1360 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 1301
Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 167276
|| |||||||| || ||||| ||| |||| || || | || || ||||| || || ||
Sbjct 1300 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCA 1241
Query 167277 GGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336
||||| || ||||| ||||| ||||||||| | || || || || |||||||||||
Sbjct 1240 GGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAATCTGGGAAGCT 1181
Query 167337 GCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTC 167396
||| || | || || ||| | ||||| || ||||||| |||| | ||| | |||||
Sbjct 1180 GCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTT 1121
Query 167397 CTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATG 167456
| |||| | | ||||||||||||||||||||||| || |||||| ||||||
Sbjct 1120 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1061
Query 167457 CGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTC 167516
||||| ||||| ||||||||| || ||||| || || || ||| ||||||| ||| |
Sbjct 1060 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTG 1001
Query 167517 GTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACA 167576
|||| || | |||||||| ||| ||||| | |||||||| || |||||||||||
Sbjct 1000 ATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 941
Query 167577 TTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATG 167636
||||||| ||| |||| ||||| || ||||||||||| || |||||||| || || |||
Sbjct 940 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 881
Query 167637 CTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTT 167696
| ||||| || || ||||||||||| || || || ||||| ||||| ||||| ||||
Sbjct 880 TTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTA 821
Query 167697 ACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTC 167756
|| ||| || | | |||||||| |||| ||| || || | ||||||| |||
Sbjct 820 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 761
Query 167757 GGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATC 167816
|| || |||||||| || |||||||| || |||||||||||||| || || || |||||
Sbjct 760 GGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 701
Query 167817 TTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCT 167876
|| ||||| || |||||||| || || || | || |||||||| || || |||||
Sbjct 700 TTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 641
Query 167877 GTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGT 167936
|| || ||||| |||| |||||||| || |||
Sbjct 640 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGT 581
Query 167937 TTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGAC 167996
||||| |||||||| || | |||||||| || ||| | ||||||||| ||
Sbjct 580 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATACTTGGGCTGAT 521
Query 167997 GTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 168056
| | ||||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 520 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 461
Query 168057 CCTCTCGACCTTGCTGCTGCTGAG 168080
||||| ||||| ||||||| ||||
Sbjct 460 CCTCTAGACCTAGCTGCTGTTGAG 437
>seq6667
Length=26159
Score = 596 bits (660), Expect = 2e-165
Identities = 735/1002 (73%), Gaps = 2/1002 (0%)
Strand=Plus/Minus
Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554
||||||||| | |||| || || |||||||| ||||||||||| || | || |||
Sbjct 10112 GATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 10053
Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614
|| ||| ||| ||||| | || |||||| | || || || | || || || |||
Sbjct 10052 CCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 9993
Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674
|||||||| || ||||| ||||||||| | || || || ||| | || || || |||
Sbjct 9992 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 9933
Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734
||||| || || | | | |||||| | || | || ||||||||||| ||||||
Sbjct 9932 TCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 9873
Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794
|| ||||| | ||||||||| | || || || ||||||||||| || ||||||||
Sbjct 9872 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 9813
Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853
|||||||| |||| ||||| ||| | ||||| |||||||| || || || || | |
Sbjct 9812 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-T 9754
Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913
|| || || ||||| || || ||||||||||| || |||||||||||| ||||| ||
Sbjct 9753 GCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCT 9694
Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973
|| || || || |||||||| ||||||| || || || ||| || || | || ||
Sbjct 9693 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 9634
Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033
|| |||||| | ||||| | ||||| || ||||| |||||| |||| |||||||||||
Sbjct 9633 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 9574
Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093
|||||| || || ||| | |||| | ||| |||| | || |||||||||| ||| ||
Sbjct 9573 GATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTGT 9514
Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153
||| |||||| | | | |||||||||| |||||||| ||| || ||| || ||
Sbjct 9513 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 9454
Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213
||| | || || || ||||||||||| || || |||||||| ||||| || ||||||||
Sbjct 9453 TCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTGG 9394
Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273
|||| || ||||| | ||||| |||||||||||| | ||||| || || | ||
Sbjct 9393 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 9334
Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 169333
| | |||| ||| | | || | | || || ||| | ||||| ||||| ||||||||
Sbjct 9333 TTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTT 9274
Query 169334 TGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAA 169393
|||||||| || ||| | ||||| |||||||| || |||||||| ||||| || || ||
Sbjct 9273 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 9214
Query 169394 CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAA 169453
|| || || ||||||||| ||||||| ||| | || || ||||| |||||||| ||
Sbjct 9213 TATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 9154
Query 169454 CTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495
| || | ||||||||||| || || || || || || || ||
Sbjct 9153 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 9112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560406356310000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |