Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq11714 601 4e-167 seq6667 596 2e-165 >seq11714 Length=14353 Score = 601 bits (666), Expect = 4e-167 Identities = 718/984 (73%), Gaps = 0/984 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||||| | || ||||| || | || ||||| || ||| ||||||||||| Sbjct 1420 TGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1361 Query 167157 ACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGAC 167216 || || | | ||||| | ||| || ||||| ||| | | ||||||||| || || Sbjct 1360 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 1301 Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 167276 || |||||||| || ||||| ||| |||| || || | || || ||||| || || || Sbjct 1300 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCA 1241 Query 167277 GGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336 ||||| || ||||| ||||| ||||||||| | || || || || ||||||||||| Sbjct 1240 GGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAATCTGGGAAGCT 1181 Query 167337 GCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTC 167396 ||| || | || || ||| | ||||| || ||||||| |||| | ||| | ||||| Sbjct 1180 GCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTT 1121 Query 167397 CTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATG 167456 | |||| | | ||||||||||||||||||||||| || |||||| |||||| Sbjct 1120 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1061 Query 167457 CGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTC 167516 ||||| ||||| ||||||||| || ||||| || || || ||| ||||||| ||| | Sbjct 1060 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTG 1001 Query 167517 GTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACA 167576 |||| || | |||||||| ||| ||||| | |||||||| || ||||||||||| Sbjct 1000 ATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 941 Query 167577 TTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATG 167636 ||||||| ||| |||| ||||| || ||||||||||| || |||||||| || || ||| Sbjct 940 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 881 Query 167637 CTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTT 167696 | ||||| || || ||||||||||| || || || ||||| ||||| ||||| |||| Sbjct 880 TTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTA 821 Query 167697 ACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTC 167756 || ||| || | | |||||||| |||| ||| || || | ||||||| ||| Sbjct 820 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 761 Query 167757 GGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATC 167816 || || |||||||| || |||||||| || |||||||||||||| || || || ||||| Sbjct 760 GGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 701 Query 167817 TTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCT 167876 || ||||| || |||||||| || || || | || |||||||| || || ||||| Sbjct 700 TTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 641 Query 167877 GTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGT 167936 || || ||||| |||| |||||||| || ||| Sbjct 640 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGT 581 Query 167937 TTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGAC 167996 ||||| |||||||| || | |||||||| || ||| | ||||||||| || Sbjct 580 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATACTTGGGCTGAT 521 Query 167997 GTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 168056 | | ||||||||| || ||||||||||||||||| || |||||||||||||||||| Sbjct 520 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 461 Query 168057 CCTCTCGACCTTGCTGCTGCTGAG 168080 ||||| ||||| ||||||| |||| Sbjct 460 CCTCTAGACCTAGCTGCTGTTGAG 437 >seq6667 Length=26159 Score = 596 bits (660), Expect = 2e-165 Identities = 735/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| || || |||||||| ||||||||||| || | || ||| Sbjct 10112 GATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 10053 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| ||||| | || |||||| | || || || | || || || ||| Sbjct 10052 CCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 9993 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 |||||||| || ||||| ||||||||| | || || || ||| | || || || ||| Sbjct 9992 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 9933 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 ||||| || || | | | |||||| | || | || ||||||||||| |||||| Sbjct 9932 TCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 9873 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || ||||| | ||||||||| | || || || ||||||||||| || |||||||| Sbjct 9872 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 9813 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853 |||||||| |||| ||||| ||| | ||||| |||||||| || || || || | | Sbjct 9812 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-T 9754 Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913 || || || ||||| || || ||||||||||| || |||||||||||| ||||| || Sbjct 9753 GCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCT 9694 Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973 || || || || |||||||| ||||||| || || || ||| || || | || || Sbjct 9693 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 9634 Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033 || |||||| | ||||| | ||||| || ||||| |||||| |||| ||||||||||| Sbjct 9633 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 9574 Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093 |||||| || || ||| | |||| | ||| |||| | || |||||||||| ||| || Sbjct 9573 GATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTGT 9514 Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153 ||| |||||| | | | |||||||||| |||||||| ||| || ||| || || Sbjct 9513 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 9454 Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213 ||| | || || || ||||||||||| || || |||||||| ||||| || |||||||| Sbjct 9453 TCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTGG 9394 Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273 |||| || ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 9393 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 9334 Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 169333 | | |||| ||| | | || | | || || ||| | ||||| ||||| |||||||| Sbjct 9333 TTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTT 9274 Query 169334 TGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAA 169393 |||||||| || ||| | ||||| |||||||| || |||||||| ||||| || || || Sbjct 9273 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 9214 Query 169394 CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAA 169453 || || || ||||||||| ||||||| ||| | || || ||||| |||||||| || Sbjct 9213 TATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 9154 Query 169454 CTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 | || | ||||||||||| || || || || || || || || Sbjct 9153 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 9112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560406356310000