Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq11714 504 1e-137 >seq11714 Length=14353 Score = 504 bits (558), Expect = 1e-137 Identities = 697/974 (72%), Gaps = 6/974 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 ||||| |||||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 1408 ACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1349 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || || | | |||| ||||||| ||||| ||||| || ||||| || || Sbjct 1348 GCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCTCCTCCAGTAGATATTGATGGT 1292 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | || || ||| |||| ||| | | || || ||||| || || || ||||| || Sbjct 1291 ATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATT 1232 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| ||| || || || || || || ||||| ||||||||||| ||| | ||| Sbjct 1231 ATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTT 1172 Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || |||||||| ||||| || || |||| |||| || | | ||||| | ||||| Sbjct 1171 GATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGT 1112 Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671 | || || || | ||||||||||| || | | | |||||| | |||||| Sbjct 1111 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 1052 Query 215672 ATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCA 215731 || |||||| || || || ||||| | ||||| ||| || ||| | | || ||| Sbjct 1051 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCA 992 Query 215732 TTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTAC 215791 | ||||| || ||| ||||||| |||||| || ||||||||||| || ||||||| Sbjct 991 ATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTT 932 Query 215792 ATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTG 215851 ||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 931 ATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTA 872 Query 215852 GCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCT 215911 || ||||| ||||| || || | || ||| ||||| ||||| | || || ||| | Sbjct 871 GCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGT 812 Query 215912 CTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 | ||||| || || || || | |||||| || | ||||||| ||||||||||| Sbjct 811 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAA 752 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || ||||| || ||||| |||||||| || ||||| ||||| || | ||||| ||||| Sbjct 751 GAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATAT 692 Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091 || ||||||||| || | | | || |||||| | || || | || || | || Sbjct 691 GCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGT 632 Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151 || ||| ||||| | ||| | || ||||| |||||||| || |||||||| ||| Sbjct 631 ATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTC 572 Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||||| || || || || || |||||| ||||||||| || || ||||| Sbjct 571 AACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAAC 512 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || |||||||||||||| ||||| || ||||| |||||||||||||| ||||| Sbjct 511 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGAC 452 Query 216272 TTGGCTGCTGCTGA 216285 | ||||||| ||| Sbjct 451 CTAGCTGCTGTTGA 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744813603462000