Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq11714 627 1e-174 seq6667 596 2e-165 >seq11714 Length=14353 Score = 627 bits (694), Expect = 1e-174 Identities = 722/969 (75%), Gaps = 6/969 (1%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 |||||||| || | || ||||||||||| |||||||||| || | ||| | ||||| Sbjct 1402 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1343 Query 181881 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAA 181940 | ||| || | || ||| | || || ||||| || ||||| || ||||| || ||| Sbjct 1342 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1283 Query 181941 CCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC 182000 || || |||| || || | || || ||||| || || || ||||| || | || | Sbjct 1282 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 1223 Query 182001 TCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGG 182060 || || |||||| | || || |||||||||||||||||||| || ||||||| ||| Sbjct 1222 TCTGCAGCTATTGGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGG 1163 Query 182061 CTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCC 182120 || || ||||| ||||||| |||| ||||| | ||||| | | || | || || Sbjct 1162 CTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG--TGTA-GCT 1106 Query 182121 T---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGT 182177 | | ||||| ||||||||||||||| || ||| | ||||||||||| ||||| | Sbjct 1105 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1046 Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 || ||||| || ||||| || || || ||| ||||||| ||||| |||| || | ||| Sbjct 1045 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGT 986 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 ||||| || || |||| ||||| || |||||||| || || ||||||| |||| | Sbjct 985 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 926 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || ||||| ||||||||||||||||||||||| || || |||||||| || ||||| ||| Sbjct 925 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGT 866 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 182417 |||||||| || || || |||||||| ||||| ||||| ||||| || ||| | || Sbjct 865 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 806 Query 182418 CGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 182477 | || || || || | || || || | ||||||| ||||| ||||||||||| Sbjct 805 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAA 746 Query 182478 ACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCA 182537 || |||||||| || || || ||||| || || || || |||||||| ||||| || Sbjct 745 ACTTATAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGT 686 Query 182538 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGG 182597 |||||||| || ||||| || || |||||| | || || ||||| || || || || ||| Sbjct 685 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 626 Query 182598 TTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 182657 || || || | ||| | ||| ||||| |||||||| || |||||||| |||||||| Sbjct 625 TTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 566 Query 182658 TCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCT 182717 || | ||||| |||| || || || |||| |||||||| ||| | | ||||||||| Sbjct 565 TCAGTAGTTGATAGTCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 506 Query 182718 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCT 182777 ||||||||||||||||||||||| ||||| || ||||||||||| ||||| || ||| Sbjct 505 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 446 Query 182778 GCTGCTGAG 182786 |||| |||| Sbjct 445 GCTGTTGAG 437 >seq6667 Length=26159 Score = 596 bits (660), Expect = 2e-165 Identities = 740/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || |||||||| ||||| || |||||||| || | || || Sbjct 10112 GATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 10053 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| |||| | || |||||| | || || ||| | ||||| || ||| Sbjct 10052 CCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 9993 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 183372 ||||| |||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 9992 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 9933 Query 183373 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAA 183432 ||||| |||||| | | | | |||||| | ||||||| ||||||||||| | ||| Sbjct 9932 TCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 9873 Query 183433 GGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGT 183492 || || ||| || ||||| ||| | || || || ||| |||||| || |||||||| Sbjct 9872 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 9813 Query 183493 GCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATC 183552 || || || | || ||||| ||| | || || |||||||||||||| | || | Sbjct 9812 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTG 9753 Query 183553 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTT 183612 || ||||| ||||| || || ||||||||||| |||||||||||||| ||| ||||| Sbjct 9752 CGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTA 9693 Query 183613 ATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATC 183672 || |||||||| ||||| ||| ||||||||||| |||||||| || ||||| || || Sbjct 9692 ATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATA 9633 Query 183673 TTTAGATTC---CTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCAT 183729 ||| ||||| || || |||| |||||||| | || ||||| || ||||| || ||| Sbjct 9632 TTTCGATTCATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTTCAT 9576 Query 183730 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACA 183789 ||||||||||| || ||| |||| || | || || || | ||||| ||||||| || Sbjct 9575 ATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACT 9516 Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCC 183849 ||||| ||||| || | ||||||||| || ||||| |||||| || ||| | | Sbjct 9515 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 9456 Query 183850 ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTC 183909 ||||||| ||||| || ||||| ||||| || || || ||||| |||||||||||||| Sbjct 9455 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTT 9396 Query 183910 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183969 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 9395 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 9336 Query 183970 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 184029 ||| | ||| | | || |||| | | || || ||| | || || ||||| ||||| Sbjct 9335 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGAC 9276 Query 184030 TTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAG 184089 || || || || ||| | ||||| |||||||| ||||||||||| ||||| || || Sbjct 9275 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 9216 Query 184090 AACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAG 184149 || || ||| | || ||||| | ||||| ||| | || || ||||| || ||||| Sbjct 9215 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 9156 Query 184150 AATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 || ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 9155 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 9106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611475980595000