Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_015289.1
Length=176184
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 657 0.0
seq6667 567 8e-157
>seq11714
Length=14353
Score = 657 bits (728), Expect = 0.0
Identities = 727/965 (75%), Gaps = 8/965 (1%)
Strand=Plus/Minus
Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGCCGCT 164847
|| |||||||| | || ||||| |||||| | |||||||| || ||| ||| ||
Sbjct 1402 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1343
Query 164848 ACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGT 164907
| ||| |||||| |||||||| |||||||| || || || |||||||||||||||
Sbjct 1342 TCCGTTT---TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 1286
Query 164908 GAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCG 164967
|||||||| | || ||||| | ||||| ||||| || || || ||||| | ||||
Sbjct 1285 GAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCT 1226
Query 164968 TCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAA 165027
||||| || || || | || || || || || |||||||||||| || | ||||||
Sbjct 1225 ACTTCTGCAGCTATTGGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAA 1166
Query 165028 TGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCT 165087
||| | |||||||| |||||||| | | |||| | ||||| | | |||||||||
Sbjct 1165 TGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1106
Query 165088 TGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 165147
|| || |||||||||||||||||||| || ||| || ||||||||||||||||||
Sbjct 1105 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1046
Query 165148 GTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGT 165207
|| |||||| || ||||| || ||||| | || |||||| || |||| || | |||
Sbjct 1045 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGT 986
Query 165208 CAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 165267
||||| ||||| ||||||||||||||||| || |||||||||||||| |||| |||| |
Sbjct 985 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 926
Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327
|| ||||| || || || |||||||||||||| || || |||||| | ||||| || ||
Sbjct 925 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGT 866
Query 165328 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTC 165387
|||||||| || || || || |||||||||||| | || ||||| | ||
Sbjct 865 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 806
Query 165388 CGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAG 165447
| || || || |||| || | || | ||||| | || ||||||||||||||
Sbjct 805 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAA 746
Query 165448 ACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCC 165507
|| |||||||| || ||||| || || || || || || | || || ||||| ||
Sbjct 745 ACTTATAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGT 686
Query 165508 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGG 165567
||||||||||| ||||| | || |||||| | || || ||||| ||||| ||||| |||
Sbjct 685 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 626
Query 165568 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 165627
|| |||||| | ||| ||||||||||||| |||||||| || |||||||| ||||||||
Sbjct 625 TTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 566
Query 165628 TCTATTGTTGATAGTC-AGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGC 165686
|| | |||||||||| || || | || |||||||||||| || | ||||||||
Sbjct 565 TCAGTAGTTGATAGTCAAGGAC-GCGTTATTAATACTTGGGCTGATATTATTAACCGTGC 507
Query 165687 TGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGC 165746
| || |||||||||||||||||||| ||||| |||||||||||||| || ||||| ||
Sbjct 506 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 447
Query 165747 TGCTG 165751
|||||
Sbjct 446 TGCTG 442
>seq6667
Length=26159
Score = 567 bits (628), Expect = 8e-157
Identities = 718/987 (73%), Gaps = 0/987 (0%)
Strand=Plus/Minus
Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250
|| || || |||||||| ||||||||||| || | || |||| ||| ||| |||||
Sbjct 10094 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCT 10035
Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310
| || |||||| |||| || || || || || || ||||||||||||||| | ||
Sbjct 10034 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 9975
Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370
|| ||| | || ||| || ||| | || || || ||||| ||||| || || |
Sbjct 9974 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGT 9915
Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430
| | |||||| | | | || ||||||||||| || ||||| ||||| | |||
Sbjct 9914 TTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 9855
Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490
|| ||| | || || || ||||| ||||||||||||||||| ||||| || |||| |||
Sbjct 9854 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 9795
Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATC 166550
|| ||| | || || |||||| | ||||| || | || || || |||||||||
Sbjct 9794 TTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGGCCTTATAATGCAATC 9735
Query 166551 GCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAA 166610
|| || |||||||| |||||||| || ||| |||||| || || || || || ||||||
Sbjct 9734 GCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAA 9675
Query 166611 TCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTC 166670
|| ||||||| || || || ||| || || | || || || |||||| |||| ||
Sbjct 9674 TCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTT 9615
Query 166671 CTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATT 166730
| ||||| || || || |||||| |||||||||||||||||||||| || || ||| |
Sbjct 9614 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTA 9555
Query 166731 CTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAA 166790
|| || | || |||| | || || ||||||| ||| ||||| || ||| | | | ||
Sbjct 9554 CTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 9495
Query 166791 GATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTAT 166850
|||||||| |||||||| ||| || || || | ||||||| |||||||| |||
Sbjct 9494 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTAT 9435
Query 166851 TCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAG 166910
|||||||| || || ||||| | |||||| || ||||| || |||| ||| |||||
Sbjct 9434 TCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 9375
Query 166911 AGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATC 166970
| ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | |
Sbjct 9374 CGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTT 9315
Query 166971 GGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGG 167030
|| | | || || ||| | ||||| ||||| |||||||| |||||||| ||| | |
Sbjct 9314 GGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGT 9255
Query 167031 GCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGT 167090
||||| || ||||| || ||||| || |||||||| || || ||||| || || || |||
Sbjct 9254 GCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGT 9195
Query 167091 ATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAG 167150
|| ||| |||||||||| || ||||| |||||||| | | |||||||||| |||
Sbjct 9194 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 9135
Query 167151 GTTCTTCCTAGAGGTAACGCTCTCTAA 167177
||||| || | || |||||||| |||
Sbjct 9134 GTTCTACCACGTGGAAACGCTCTTTAA 9108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563458058256000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |