Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq11714 657 0.0 seq6667 567 8e-157 >seq11714 Length=14353 Score = 657 bits (728), Expect = 0.0 Identities = 727/965 (75%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGCCGCT 164847 || |||||||| | || ||||| |||||| | |||||||| || ||| ||| || Sbjct 1402 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1343 Query 164848 ACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGT 164907 | ||| |||||| |||||||| |||||||| || || || ||||||||||||||| Sbjct 1342 TCCGTTT---TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 1286 Query 164908 GAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCG 164967 |||||||| | || ||||| | ||||| ||||| || || || ||||| | |||| Sbjct 1285 GAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCT 1226 Query 164968 TCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAA 165027 ||||| || || || | || || || || || |||||||||||| || | |||||| Sbjct 1225 ACTTCTGCAGCTATTGGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAA 1166 Query 165028 TGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCT 165087 ||| | |||||||| |||||||| | | |||| | ||||| | | ||||||||| Sbjct 1165 TGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1106 Query 165088 TGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 165147 || || |||||||||||||||||||| || ||| || |||||||||||||||||| Sbjct 1105 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1046 Query 165148 GTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGT 165207 || |||||| || ||||| || ||||| | || |||||| || |||| || | ||| Sbjct 1045 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGT 986 Query 165208 CAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 165267 ||||| ||||| ||||||||||||||||| || |||||||||||||| |||| |||| | Sbjct 985 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 926 Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327 || ||||| || || || |||||||||||||| || || |||||| | ||||| || || Sbjct 925 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGT 866 Query 165328 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTC 165387 |||||||| || || || || |||||||||||| | || ||||| | || Sbjct 865 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 806 Query 165388 CGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAG 165447 | || || || |||| || | || | ||||| | || |||||||||||||| Sbjct 805 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAA 746 Query 165448 ACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCC 165507 || |||||||| || ||||| || || || || || || | || || ||||| || Sbjct 745 ACTTATAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGT 686 Query 165508 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGG 165567 ||||||||||| ||||| | || |||||| | || || ||||| ||||| ||||| ||| Sbjct 685 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 626 Query 165568 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 165627 || |||||| | ||| ||||||||||||| |||||||| || |||||||| |||||||| Sbjct 625 TTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 566 Query 165628 TCTATTGTTGATAGTC-AGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGC 165686 || | |||||||||| || || | || |||||||||||| || | |||||||| Sbjct 565 TCAGTAGTTGATAGTCAAGGAC-GCGTTATTAATACTTGGGCTGATATTATTAACCGTGC 507 Query 165687 TGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGC 165746 | || |||||||||||||||||||| ||||| |||||||||||||| || ||||| || Sbjct 506 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 447 Query 165747 TGCTG 165751 ||||| Sbjct 446 TGCTG 442 >seq6667 Length=26159 Score = 567 bits (628), Expect = 8e-157 Identities = 718/987 (73%), Gaps = 0/987 (0%) Strand=Plus/Minus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || || || |||||||| ||||||||||| || | || |||| ||| ||| ||||| Sbjct 10094 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCT 10035 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || ||||||||||||||| | || Sbjct 10034 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 9975 Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370 || ||| | || ||| || ||| | || || || ||||| ||||| || || | Sbjct 9974 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGT 9915 Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430 | | |||||| | | | || ||||||||||| || ||||| ||||| | ||| Sbjct 9914 TTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 9855 Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490 || ||| | || || || ||||| ||||||||||||||||| ||||| || |||| ||| Sbjct 9854 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 9795 Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATC 166550 || ||| | || || |||||| | ||||| || | || || || ||||||||| Sbjct 9794 TTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGGCCTTATAATGCAATC 9735 Query 166551 GCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAA 166610 || || |||||||| |||||||| || ||| |||||| || || || || || |||||| Sbjct 9734 GCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAA 9675 Query 166611 TCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTC 166670 || ||||||| || || || ||| || || | || || || |||||| |||| || Sbjct 9674 TCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTT 9615 Query 166671 CTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATT 166730 | ||||| || || || |||||| |||||||||||||||||||||| || || ||| | Sbjct 9614 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTA 9555 Query 166731 CTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAA 166790 || || | || |||| | || || ||||||| ||| ||||| || ||| | | | || Sbjct 9554 CTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 9495 Query 166791 GATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTAT 166850 |||||||| |||||||| ||| || || || | ||||||| |||||||| ||| Sbjct 9494 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTAT 9435 Query 166851 TCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAG 166910 |||||||| || || ||||| | |||||| || ||||| || |||| ||| ||||| Sbjct 9434 TCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 9375 Query 166911 AGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATC 166970 | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | | Sbjct 9374 CGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTT 9315 Query 166971 GGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGG 167030 || | | || || ||| | ||||| ||||| |||||||| |||||||| ||| | | Sbjct 9314 GGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGT 9255 Query 167031 GCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGT 167090 ||||| || ||||| || ||||| || |||||||| || || ||||| || || || ||| Sbjct 9254 GCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGT 9195 Query 167091 ATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAG 167150 || ||| |||||||||| || ||||| |||||||| | | |||||||||| ||| Sbjct 9194 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 9135 Query 167151 GTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||||| || | || |||||||| ||| Sbjct 9134 GTTCTACCACGTGGAAACGCTCTTTAA 9108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563458058256000