Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 161 1e-34
seq28467 125 8e-24
seq21777 100 3e-16
>seq18099
Length=159039
Score = 161 bits (178), Expect = 1e-34
Identities = 574/886 (65%), Gaps = 17/886 (2%)
Strand=Plus/Minus
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
||| ||||| || ||||||| || ||||| |||||||| || || | ||| ||| |
Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788
||||| ||||||| ||||| | ||| ||| | ||| | || | | ||
Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
| |||||||| ||||| | |||||| |||||| |||| |||||| || | ||
Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765
Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908
| ||| || || || | ||| ||| || || | || || || | | |||
Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705
Query 18909 AGATACAACTCTATCTTCATTAGGAGG-GTA--TAGAAGATGTTTAAACATCAAACATGC 18965
|| ||||| || ||| || | ||| || ||| || |||| ||||||| ||
Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAGC 20648
Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025
|||||||| || || || |||||||| || || || ||||| || |||||||||||
Sbjct 20647 GAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGG 20588
Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085
||| ||||| | ||| || | |||||| || ||| || || ||||| |||||||||||
Sbjct 20587 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 20528
Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC--ATAACTAGCATCATTATTATGAATC 19143
||| || || || || || | | ||| | || | ||| || |||
Sbjct 20527 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-----CATCGATC 20473
Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203
|| ||| ||||| | ||| ||||| | ||||| || || || || || | | |||
Sbjct 20472 CAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAAT 20413
Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263
| || | || | ||||||| | |||| || | | | | ||||| |||
Sbjct 20412 AAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCT 20353
Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323
||||| ||||| || ||||| || || |||||||| || | ||||| | | |||
Sbjct 20352 GAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGT 20293
Query 19324 ACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382
|| || ||| |||| | | | ||||| || ||||| ||| || || ||
Sbjct 20292 ACATC-TGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAA 20234
Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCAT 19441
|| || | ||| ||||| || || || ||| || | ||| | | || ||| |||
Sbjct 20233 GAAAGCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCAC 20175
Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501
| |||| || | ||| |||||||| | ||||| || || || || ||||| || |
Sbjct 20174 GGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGT 20115
Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547
|||| | ||| || | | || || || ||||| ||| |||||
Sbjct 20114 ACATTTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 20069
>seq28467
Length=106825
Score = 125 bits (138), Expect = 8e-24
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | ||||||| ||| | || | | ||| || |||||||||
Sbjct 81284 CCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 81343
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| ||||| || || ||||||||||||| | || | |||||| ||| |||
Sbjct 81344 TTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGAA 81403
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| |||||||| || |||| ||| |||||| ||| | |||||||| |||
Sbjct 81404 ACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATATT 81463
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581
|| || ||||||||||| ||||| | ||||| || |||
Sbjct 81464 CCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
||||||||||| |||| || ||||| |||||| |||||||| ||| ||| | || | |
Sbjct 81616 GTTCCTGAATTGAATAGAGTCGGAGACGCATGAGTAAACCATCTCTGTGACATTAAATGA 81675
Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718
|| ||||| | ||||||| ||||| | ||| |||||||| | ||| || | ||| ||
Sbjct 81676 TACGTTTCCACCGCAGAATCAATATCTTCCTTG-TGTATACCAACAGAAACTCTCATCAA 81734
Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778
||| | |||||| |||||||||| ||| || || ||||| || ||| | || |
Sbjct 81735 CATGTGTTGAGGCCTTTCAACAACTTTTCCTCGGATCTTTAAAAGGTAAGATCTCTCAAG 81794
Query 48779 TGTTTTAAAACCAAAATA 48796
|| || || ||||| ||
Sbjct 81795 CGTCTTGAATCCAAAGTA 81812
>seq21777
Length=19835
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||| | ||||||| || | || | | ||| || || ||||||
Sbjct 4043 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACGATACCA 4102
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
||||| | ||||| || || ||| ||||||||| | || | |||||| || ||||
Sbjct 4103 TTTGACGTTCCATTTGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 4162
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || ||||| || ||| ||| | ||||||| ||| || || ||||| ||
Sbjct 4163 ACACCAATCCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 4222
Query 48540 CCTTCTATACTATCATCTATCAT 48562
|| || || || |||||| ||||
Sbjct 4223 CCCTCGATGCTGTCATCTTTCAT 4245
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||||| || || | || |||||||||||| | |||||| ||| || | || |
Sbjct 4383 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAAGTG 4442
Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717
|| |||| ||| |||| || ||||| | ||| ||||| || | || || | ||| |
Sbjct 4443 GTAAGTTTTAATTGCAGAGTCAATATCATCCTTG-TGTATCCCAACAGCAACCCTCATCA 4501
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTT--ATTTTCAAAAGATATGATTTTTC 48775
||| | |||||| || ||||||| |||| || | ||| || || |||||| | ||
Sbjct 4502 GCATGTGTTGAGGCCTCTCAACAA--CTGTTCCTTGGACTTTTAAGAGGTATGATCTCTC 4559
Query 48776 CAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811
| ||||| || ||||| || | |||| ||| ||
Sbjct 4560 AAGCGTTTTGAATCCAAAGTAATCGTATTCAAAATC 4595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561906616491000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |