Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq18099 161 1e-34 seq28467 125 8e-24 seq21777 100 3e-16 >seq18099 Length=159039 Score = 161 bits (178), Expect = 1e-34 Identities = 574/886 (65%), Gaps = 17/886 (2%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || ||||| |||||||| || || | ||| ||| | Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||| ||||| | ||| ||| | ||| | || | | || Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | |||||||| ||||| | |||||| |||||| |||| |||||| || | || Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || || || | ||| ||| || || | || || || | | ||| Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705 Query 18909 AGATACAACTCTATCTTCATTAGGAGG-GTA--TAGAAGATGTTTAAACATCAAACATGC 18965 || ||||| || ||| || | ||| || ||| || |||| ||||||| || Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAGC 20648 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 |||||||| || || || |||||||| || || || ||||| || ||||||||||| Sbjct 20647 GAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGG 20588 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| ||||| | ||| || | |||||| || ||| || || ||||| ||||||||||| Sbjct 20587 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 20528 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC--ATAACTAGCATCATTATTATGAATC 19143 ||| || || || || || | | ||| | || | ||| || ||| Sbjct 20527 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-----CATCGATC 20473 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || ||| ||||| | ||| ||||| | ||||| || || || || || | | ||| Sbjct 20472 CAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAAT 20413 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | || | || | ||||||| | |||| || | | | | ||||| ||| Sbjct 20412 AAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCT 20353 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 ||||| ||||| || ||||| || || |||||||| || | ||||| | | ||| Sbjct 20352 GAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGT 20293 Query 19324 ACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 || || ||| |||| | | | ||||| || ||||| ||| || || || Sbjct 20292 ACATC-TGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAA 20234 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCAT 19441 || || | ||| ||||| || || || ||| || | ||| | | || ||| ||| Sbjct 20233 GAAAGCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCAC 20175 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | |||| || | ||| |||||||| | ||||| || || || || ||||| || | Sbjct 20174 GGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGT 20115 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 |||| | ||| || | | || || || ||||| ||| ||||| Sbjct 20114 ACATTTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 20069 >seq28467 Length=106825 Score = 125 bits (138), Expect = 8e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| ||| | || | | ||| || ||||||||| Sbjct 81284 CCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 81343 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || ||||||||||||| | || | |||||| ||| ||| Sbjct 81344 TTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGAA 81403 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || |||| ||| |||||| ||| | |||||||| ||| Sbjct 81404 ACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATATT 81463 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || ||||||||||| ||||| | ||||| || ||| Sbjct 81464 CCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||||||| |||| || ||||| |||||| |||||||| ||| ||| | || | | Sbjct 81616 GTTCCTGAATTGAATAGAGTCGGAGACGCATGAGTAAACCATCTCTGTGACATTAAATGA 81675 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || ||||| | ||||||| ||||| | ||| |||||||| | ||| || | ||| || Sbjct 81676 TACGTTTCCACCGCAGAATCAATATCTTCCTTG-TGTATACCAACAGAAACTCTCATCAA 81734 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||||| ||| || || ||||| || ||| | || | Sbjct 81735 CATGTGTTGAGGCCTTTCAACAACTTTTCCTCGGATCTTTAAAAGGTAAGATCTCTCAAG 81794 Query 48779 TGTTTTAAAACCAAAATA 48796 || || || ||||| || Sbjct 81795 CGTCTTGAATCCAAAGTA 81812 >seq21777 Length=19835 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | ||| || || |||||| Sbjct 4043 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACGATACCA 4102 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 ||||| | ||||| || || ||| ||||||||| | || | |||||| || |||| Sbjct 4103 TTTGACGTTCCATTTGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 4162 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || ||| ||| | ||||||| ||| || || ||||| || Sbjct 4163 ACACCAATCCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 4222 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || || |||||| |||| Sbjct 4223 CCCTCGATGCTGTCATCTTTCAT 4245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| || || | || |||||||||||| | |||||| ||| || | || | Sbjct 4383 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAAGTG 4442 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| ||| |||| || ||||| | ||| ||||| || | || || | ||| | Sbjct 4443 GTAAGTTTTAATTGCAGAGTCAATATCATCCTTG-TGTATCCCAACAGCAACCCTCATCA 4501 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTT--ATTTTCAAAAGATATGATTTTTC 48775 ||| | |||||| || ||||||| |||| || | ||| || || |||||| | || Sbjct 4502 GCATGTGTTGAGGCCTCTCAACAA--CTGTTCCTTGGACTTTTAAGAGGTATGATCTCTC 4559 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 | ||||| || ||||| || | |||| ||| || Sbjct 4560 AAGCGTTTTGAATCCAAAGTAATCGTATTCAAAATC 4595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561906616491000