Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 549 6e-152
>seq11714
Length=14353
Score = 549 bits (608), Expect = 6e-152
Identities = 722/996 (72%), Gaps = 6/996 (1%)
Strand=Plus/Plus
Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244
|||| |||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 437 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 496
Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304
||||||||| |||||||| | | ||| |||||||| || | | || | ||
Sbjct 497 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACTATC 556
Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364
||| ||||| || ||||| || || || || || || |||||||| ||| || || |
Sbjct 557 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 616
Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424
|| |||| ||| || | || || ||||||| || | ||||||||||||| |||
Sbjct 617 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 676
Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484
|||||| || |||||||| || ||||| | || ||||| || |||||||| || |||||
Sbjct 677 ATTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 736
Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544
|||||| |||||||| ||||| |||||| | || || | || ||| | | ||
Sbjct 737 GTTATAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 796
Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604
||||| | || | |||||| || | |||||||||||| || | | ||
Sbjct 797 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 856
Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664
|||||||| || || || || | |||||| || || |||||||| || ||||| || ||
Sbjct 857 GCCGAATACACCCGCTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 916
Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724
||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 917 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 976
Query 5725 ACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTG 5783
|||||| || || | ||||| | || || || | ||| || || ||||| || ||||
Sbjct 977 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGT-TGCAGCTGCAACAGGAGCTG 1035
Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843
||||||| || |||||| || ||||| || | | | ||||||||||||| | || |
Sbjct 1036 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 1095
Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903
||| ||| || | ||||| | ||||| | || | |||| || || || || |
Sbjct 1096 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 1155
Query 5904 TGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961
|||| ||||||||||| | ||| || ||||||||||| || || || || || |||||
Sbjct 1156 TGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGATTGGGTAAAAATGCAAACCAAT 1213
Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021
|| || | || | || ||| ||||| || || |||||||| || || ||||||||
Sbjct 1214 AGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCC 1273
Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081
| || |||||||| || || || || || ||||| || ||||| | |||||| | ||
Sbjct 1274 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1333
Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141
||| | | ||||||||| || | | || ||||| || ||||||||||| || | ||
Sbjct 1334 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1393
Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
|| || || | ||||| || | ||||| ||||||
Sbjct 1394 AAGACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152597439154650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |