Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq18099 116 4e-21 >seq18099 Length=159039 Score = 116 bits (128), Expect = 4e-21 Identities = 343/526 (65%), Gaps = 7/526 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || |||||||| || | |||||| ||||| || || || ||||| || ||| Sbjct 20655 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTT 20596 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 || || ||||| | || | ||| |||| ||| || || | || || ||||| ||| Sbjct 20595 AAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAG 20536 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || ||||||||||| || || ||||| | |||| | |||| ||| | | || Sbjct 20535 AATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTT---TGAGATCCA 20479 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 ||||| | | | ||| | || || ||||||| ||| ||||| ||||| Sbjct 20478 TCGATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCA 20419 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || | | | | |||||| ||||| | || || || || | || | | |||| Sbjct 20418 CGGAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATAC 20359 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 || || || || ||||| |||||||| || || || || || || | ||||| || Sbjct 20358 ATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAG 20299 Query 37533 AATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 | ||| ||||| | || | ||| | |||||| || || || ||| || Sbjct 20298 ACTTGTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCG 20239 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAATTTTTTCC 37650 || |||||||| || || | ||| || || || | ||| | | |||| | |||| || Sbjct 20238 GCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGA--TTTTCCC 20181 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | ||| | |||| ||| | ||| ||||| || ||||||| || Sbjct 20180 AGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAA 20135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592103751051000